CFinderADM002253's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: IWS1 | 1.24E-05 | TF family |
| peroxiredoxin activity | 8.70E-05 | GO:0051920 |
| G-protein beta/gamma-subunit complex binding | 8.70E-05 | GO:0031683 |
| cellular nitrogen compound biosynthetic process | 0.000140279 | GO:0044271 |
| ABC transporters | 0.000204416 | KEGG pathway |
| G-protein coupled receptor signaling pathway | 0.0002055 | GO:0007186 |
| gene expression | 0.0002055 | GO:0010467 |
| cellular macromolecule biosynthetic process | 0.000245054 | GO:0034645 |
| signal transducer activity | 0.000825643 | GO:0004871 |
| mitochondrial matrix | 0.00131178 | GO:0005759 |
| primary metabolic process | 0.001376979 | GO:0044238 |
| response to oxidative stress | 0.005861537 | GO:0006979 |
| cellular oxidant detoxification | 0.005861537 | GO:0098869 |
| ATPase activity, coupled to transmembrane movement of substances | 0.006102464 | GO:0042626 |
| peroxidase activity | 0.006102464 | GO:0004601 |
| GTPase activity | 0.00671165 | GO:0003924 |
| ubiquitin-protein transferase activity | 0.007595683 | GO:0004842 |
| protein ubiquitination | 0.008502656 | GO:0016567 |
| GTP binding | 0.01206732 | GO:0005525 |
| transmembrane transport | 0.026994597 | GO:0055085 |
| nucleic acid binding | 0.037266489 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007235 | AT2G25640 (2.00E-08) | SPOC domain / Transcription elongation factor S-II protein |
| CRO_T009105 | AT2G23140 (9.00E-27) | PUB4|plant U-box 4 |
| CRO_T018878 | AT1G60740 (5.00E-25) | Thioredoxin superfamily protein |
| CRO_T019849 | AT1G31930 (3.00E-164) | XLG3|extra-large GTP-binding protein 3 |
| CRO_T029150 | AT3G55320 (1.00E-70) | ABCB20|ATP-binding cassette B20; PGP20|P-glycoprotein 20 |
| CRO_T033390 | AT4G26455 (8.00E-34) | AtWIP1|WPP domain interacting protein 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000885 | protein kinase activity Protein_kinases_phosphatases, PPC:1.15.1: Receptor Like Cytoplasmic Kinase I peroxiredoxin activity Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) NF-kappa B signaling pathway mitochondrial matrix peroxidase activity cellular oxidant detoxification response to oxidative stress endoplasmic reticulum binding integral component of membrane | details |
| CFinderADM001305 | Circadian rhythm DNA (6-4) photolyase activity response to UV ABC transporters aerobic respiration I (cytochrome c) DNA repair chloroplast ATPase activity, coupled to transmembrane movement of substances nucleus transmembrane transport | details |
| CFinderADM001306 | Circadian rhythm DNA (6-4) photolyase activity response to UV photoreactive repair deoxyribodipyrimidine photo-lyase activity UV protection Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX salicylate glucosides biosynthesis II transmembrane transport organophosphate ester transport organic phosphonate transport ABC transporters organic phosphonate transmembrane-transporting ATPase activity ATP binding quercetin glucoside biosynthesis (Allium) aerobic respiration I (cytochrome c) quercetin gentiotetraside biosynthesis DNA repair ATPase activity, coupled to transmembrane movement of substances protein ubiquitination ubiquitin-protein transferase activity protein kinase activity nucleus | details |
| CFinderADM001519 | ATP-dependent DNA helicase activity peroxiredoxin activity nucleobase-containing compound metabolic process mitochondrial matrix DNA duplex unwinding response to biotic stimulus calmodulin binding peroxidase activity cellular oxidant detoxification response to oxidative stress defense response Ubiquitin_Proteasome_system, E3 adaptor: F-box DNA binding | details |
| CFinderADM001624 | positive regulation of DNA-templated transcription, elongation membrane coat ABC transporters Lysosome Peroxisome vesicle-mediated transport intracellular protein transport ATPase activity, coupled to transmembrane movement of substances plasmodesma transmembrane transport transcription, DNA-templated | details |
| CFinderADM002189 | Amino sugar and nucleotide sugar metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc UDP-arabinopyranose mutase activity hexosaminidase activity G-protein beta/gamma-subunit complex binding carboxy-lyase activity plant-type cell wall biogenesis UDP-L-arabinose metabolic process G-protein coupled receptor signaling pathway phospholipid biosynthetic process Wnt signaling pathway regulation of cell shape Endocytosis signal transducer activity Glycerophospholipid metabolism cellulose biosynthetic process peptidyl-serine phosphorylation GTPase activity GTP binding cytoplasmic part metabolic process Golgi apparatus plasmodesma protein serine/threonine kinase activity | details |
| CFinderADM002305 | recognition of pollen Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) carbohydrate binding Ubiquitin_Proteasome_system, E3 adaptor: DWD adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein phosphorylation protein serine/threonine kinase activity | details |
| CFinderADM002310 | L-gulono-1,4-lactone dehydrogenase activity galactonolactone dehydrogenase activity D-arabinono-1,4-lactone oxidase activity L-ascorbate biosynthesis I (L-galactose pathway) vacuole organization membrane coat Transcription_related, Transcription regulator: TRAF Ascorbate and aldarate metabolism Lysosome Ubiquitin_Proteasome_system, E3 adaptor: BTB formation of glycosidic bonds, GlycosylTransferases: GTnc flavin adenine dinucleotide binding methyltransferase activity vesicle-mediated transport plastid Plant hormone signal transduction intracellular protein transport methylation | details |
Expression profiles
 Show details about module gene expression profiling |