CFinderADM001635's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: N-domain | 7.94E-06 | ubs family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 9.92E-06 | cazy family |
| protein N-glycosylation (eukaryotic, high mannose) | 0.000130894 | plantCyc |
| fatty-acyl-CoA binding | 0.000562771 | GO:0000062 |
| protein catabolic process | 0.000620175 | GO:0030163 |
| peptidyl-tyrosine phosphorylation | 0.000620175 | GO:0018108 |
| N-Glycan biosynthesis | 0.000649055 | KEGG pathway |
| non-membrane spanning protein tyrosine kinase activity | 0.001342527 | GO:0004715 |
| transferase activity, transferring hexosyl groups | 0.001342527 | GO:0016758 |
| heterocyclic compound binding | 0.003056708 | GO:1901363 |
| organic cyclic compound binding | 0.003056708 | GO:0097159 |
| integral component of membrane | 0.00393097 | GO:0016021 |
| endoplasmic reticulum membrane | 0.004521953 | GO:0005789 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007835 | AT4G34310 (0) | alpha/beta-Hydrolases superfamily protein |
| CRO_T014774 | AT3G25805 (4.00E-110) | unknown protein |
| CRO_T018688 | AT1G68660 (2.00E-30) | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein |
| CRO_T019545 | AT5G01015 (6.00E-16) | unknown protein |
| CRO_T020850 | AT5G60980 (7.00E-13) | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
| CRO_T022764 | - | - |
| CRO_T023123 | AT5G38460 (7.00E-91) | ALG6, ALG8 glycosyltransferase family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000764 | SRP-dependent cotranslational protein targeting to membrane tRNA aminoacylation for protein translation signal recognition particle, endoplasmic reticulum targeting aminoacyl-tRNA ligase activity 7S RNA binding Aminoacyl-tRNA biosynthesis Protein export GTPase activity ATPase activity, coupled to transmembrane movement of substances GTP binding transmembrane transport integral component of membrane | details |
| CFinderADM001044 | response to endoplasmic reticulum stress vacuolar membrane protein disulfide isomerase activity mitochondrion production of siRNA involved in chromatin silencing by small RNA response to pH long-distance posttranscriptional gene silencing cell redox homeostasis response to oxidative stress protein folding transferase activity, transferring glycosyl groups cell-cell signaling production of siRNA involved in RNA interference transcription, RNA-templated regulation of signal transduction endoplasmic reticulum sphingolipid biosynthesis (plants) xylogalacturonan biosynthesis RNA-directed RNA polymerase activity 5S rRNA binding Protein processing in endoplasmic reticulum fatty-acyl-CoA binding NLS-bearing protein import into nucleus Sphingolipid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) nuclear localization sequence binding translation defense response to fungus protein processing formation of translation preinitiation complex structural constituent of ribosome nuclear pore nucleoplasm protein transporter activity signal transduction translation initiation factor activity GTPase activity chloroplast RNA transport | details |
| CFinderADM001302 | glucose-1-phosphate phosphodismutase activity oxidoreductase activity, acting on iron-sulfur proteins as donors hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycopeptide alpha-N-acetylgalactosaminidase activity sucrose alpha-glucosidase activity oxidation-reduction process oxidoreductase activity phosphorylation metabolic process chloroplast envelope chloroplast stroma | details |
| CFinderADM001389 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein glycosylation galactosyltransferase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis heterocyclic compound binding organic cyclic compound binding Golgi membrane DNA binding | details |
| CFinderADM001391 | phenylalanine-tRNA ligase complex Transcription_related, Transcription regulator: ARID phenylalanyl-tRNA aminoacylation karyogamy signal recognition particle, endoplasmic reticulum targeting SRP-dependent cotranslational protein targeting to membrane fatty-acyl-CoA binding 7S RNA binding phenylalanine-tRNA ligase activity Aminoacyl-tRNA biosynthesis Protein export GTPase activity magnesium ion binding GTP binding RNA binding cytosol | details |
| CFinderADM001605 | Ubiquitin_Proteasome_system, E3: N-domain diphosphate-fructose-6-phosphate 1-phosphotransferase activity 6-phosphofructokinase activity clathrin adaptor complex glycolytic process through fructose-6-phosphate intracellular organelle glycolysis IV (plant cytosol) Glycolysis / Gluconeogenesis carbohydrate phosphorylation protein catabolic process biosynthetic process vesicle-mediated transport Endocytosis intracellular protein transport Ubiquitin_Proteasome_system, E3 adaptor: DWD pyridoxal phosphate binding catalytic activity | details |
| CFinderADM001825 | metallocarboxypeptidase activity Transcription_related, Transcription regulator: IWS1 clathrin adaptor complex extracellular space Endocytosis biosynthetic process vesicle-mediated transport intracellular protein transport pyridoxal phosphate binding catalytic activity proteolysis integral component of membrane | details |
| CFinderADM001912 | Ubiquitin_Proteasome_system, E3: N-domain acetylglucosaminyltransferase activity non-membrane spanning protein tyrosine kinase activity protein catabolic process peptidyl-tyrosine phosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc transport integral component of membrane protein serine/threonine kinase activity | details |
| CFinderADM002074 | formation of glycosidic bonds, GlycosylTransferases: GTnc Other types of O-glycan biosynthesis protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis drug transmembrane transport heterocyclic compound binding organic cyclic compound binding drug transmembrane transporter activity antiporter activity transferase activity, transferring hexosyl groups transferase activity, transferring glycosyl groups serine-type endopeptidase activity integral component of membrane endoplasmic reticulum membrane cell wall Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |