CFinderADM001389's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.00019217 | cazy family |
| protein glycosylation | 0.000344152 | GO:0006486 |
| galactosyltransferase activity | 0.000372688 | GO:0008378 |
| endonuclease activity | 0.000372688 | GO:0004519 |
| nucleic acid phosphodiester bond hydrolysis | 0.000593774 | GO:0090305 |
| heterocyclic compound binding | 0.001222139 | GO:1901363 |
| organic cyclic compound binding | 0.001222139 | GO:0097159 |
| Golgi membrane | 0.001348929 | GO:0000139 |
| DNA binding | 0.038053716 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009113 | - | - |
| CRO_T009921 | - | - |
| CRO_T017742 | AT4G32120 (1.00E-53) | Galactosyltransferase family protein |
| CRO_T020850 | AT5G60980 (7.00E-13) | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
| CRO_T025180 | AT1G67660 (2.00E-93) | Restriction endonuclease, type II-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000749 | magnesium ion transmembrane transporter activity magnesium ion transmembrane transport magnesium ion transport pollen tube reception conjugation negative regulation of cell growth Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) Transcription_related, Transcription regulator: Coactivator p15 filiform apparatus autophagosome response to brassinosteroid endosome membrane protein depalmitoylation plasmodesma pseudouridine synthesis palmitoyl-(protein) hydrolase activity cyclin-dependent protein serine/threonine kinase activity ATP binding activation of GTPase activity regulation of vesicle fusion regulation of cell cycle response to starvation negative regulation of abscisic acid-activated signaling pathway mitotic nuclear division autophagy pseudouridine synthase activity Rab GTPase binding MAP kinase activity Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Transcription_related, Transcription factor: HSF carboxylic ester hydrolase activity galactosyltransferase activity post-embryonic development defense response to fungus response to ethylene protein glycosylation GTPase activator activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAPK cascade root development cell division protein autophosphorylation RNA processing Golgi membrane Glycerophospholipid metabolism mRNA surveillance pathway Ribosome biogenesis in eukaryotes heterocyclic compound binding organic cyclic compound binding MAPK signaling pathway - plant Ubiquitin_Proteasome_system, E3: U-box plasma membrane ATPase activity, coupled to transmembrane movement of substances ligase activity nucleolus intracellular protein transport ubiquitin-protein transferase activity protein ubiquitination | details |
| CFinderADM001204 | Transcription_related, Transcription factor: ARR-B phosphorelay signal transduction system Plant hormone signal transduction transcription factor activity, sequence-specific DNA binding transcription, DNA-templated regulation of transcription, DNA-templated DNA binding | details |
| CFinderADM001635 | Ubiquitin_Proteasome_system, E3: N-domain formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) fatty-acyl-CoA binding protein catabolic process peptidyl-tyrosine phosphorylation N-Glycan biosynthesis non-membrane spanning protein tyrosine kinase activity transferase activity, transferring hexosyl groups heterocyclic compound binding organic cyclic compound binding integral component of membrane endoplasmic reticulum membrane | details |
| CFinderADM002027 | tetracyclic triterpenoid biosynthetic process calcium:proton antiporter activity cycloartenol synthase activity plant sterol biosynthesis II mangrove triterpenoid biosynthesis cytoplasmic microtubule organization calcium ion transmembrane transport Steroid biosynthesis plant sterol biosynthesis microtubule-severing ATPase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis | details |
| CFinderADM002036 | RNA biosynthetic process xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc endonuclease activity nucleic acid phosphodiester bond hydrolysis DNA-directed RNA polymerase activity DNA binding | details |
| CFinderADM002074 | formation of glycosidic bonds, GlycosylTransferases: GTnc Other types of O-glycan biosynthesis protein N-glycosylation (eukaryotic, high mannose) N-Glycan biosynthesis drug transmembrane transport heterocyclic compound binding organic cyclic compound binding drug transmembrane transporter activity antiporter activity transferase activity, transferring hexosyl groups transferase activity, transferring glycosyl groups serine-type endopeptidase activity integral component of membrane endoplasmic reticulum membrane cell wall Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002215 | Protein_kinases_phosphatases, PPC:1.3.2: Leucine Rich Repeat Receptor VIII D-myo-inositol-5-phosphate metabolism phosphatidylinositol phospholipase C activity Cytochrome_P450, Cytochrome P450: CYP71B D-myo-inositol (1,4,5)-trisphosphate biosynthesis phosphatidate metabolism, as a signaling molecule Inositol phosphate metabolism phospholipases endonuclease activity signal transducer activity lipid catabolic process lipid binding nucleic acid phosphodiester bond hydrolysis intracellular signal transduction secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 endoplasmic reticulum intracellular phosphorylation protein kinase activity iron ion binding heme binding nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |