CFinderADM001684's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| embryo development ending in seed dormancy | 2.06E-11 | GO:0009793 |
| mitochondrion | 9.94E-11 | GO:0005739 |
| rRNA transcription from plastid promoter | 9.36E-06 | GO:0042794 |
| chloroplast envelope | 1.16E-05 | GO:0009941 |
| 3'-phospho-5'-adenylyl sulfate transmembrane transport | 2.34E-05 | GO:1902559 |
| aspartate-tRNA ligase activity | 3.62E-05 | GO:0004815 |
| 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 3.62E-05 | GO:0046964 |
| viral envelope | 5.80E-05 | GO:0019031 |
| integral component of Golgi membrane | 7.45E-05 | GO:0030173 |
| integral component of endoplasmic reticulum membrane | 7.59E-05 | GO:0030176 |
| tRNA aminoacylation for protein translation | 8.41E-05 | GO:0006418 |
| Transcription_related, Transcription regulator: mTERF | 0.00015988 | TF family |
| metallopeptidase activity | 0.000188133 | GO:0008237 |
| RNA splicing | 0.000237912 | GO:0008380 |
| vesicle docking | 0.000307643 | GO:0048278 |
| vesicle fusion | 0.000545738 | GO:0006906 |
| carbohydrate transport | 0.000545738 | GO:0008643 |
| ATP-dependent peptidase activity | 0.000586413 | GO:0004176 |
| double-stranded DNA binding | 0.000670556 | GO:0003690 |
| Aminoacyl-tRNA biosynthesis | 0.000710386 | KEGG pathway |
| SNARE binding | 0.000802008 | GO:0000149 |
| SNAP receptor activity | 0.000802008 | GO:0005484 |
| SNARE complex | 0.000917287 | GO:0031201 |
| endomembrane system | 0.002129821 | GO:0012505 |
| plastid | 0.003712636 | GO:0009536 |
| intracellular protein transport | 0.005174146 | GO:0006886 |
| ATP binding | 0.007947081 | GO:0005524 |
| proteolysis | 0.018870671 | GO:0006508 |
| nucleic acid binding | 0.027117113 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008437 | AT1G10510 (0) | emb2004|embryo defective 2004 |
| CRO_T010344 | AT5G64580 (2.00E-102) | EMB3144|EMBRYO DEFECTIVE 3144 |
| CRO_T016616 | AT1G14360 (7.00E-15) | UTR3|UDP-galactose transporter 3 |
| CRO_T024770 | AT4G33760 (8.00E-130) | tRNA synthetase class II (D, K and N) family protein |
| CRO_T030704 | AT4G17730 (2.00E-87) | SYP23|syntaxin of plants 23 |
| CRO_T032716 | AT2G34620 (5.00E-14) | Mitochondrial transcription termination factor family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001346 | (+)-camphor biosynthesis Transcription_related, Transcription factor: C2C2-CO-like 3'-phospho-5'-adenylyl sulfate transmembrane transport 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity Cytochrome_P450, Cytochrome P450: CYP81D integral component of endoplasmic reticulum membrane integral component of Golgi membrane matairesinol biosynthesis indole glucosinolate metabolic process defense response to other organism sesamin biosynthesis carbohydrate transport secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen regulation of transcription, DNA-templated oxidoreductase activity | details |
| CFinderADM001349 | iron incorporation into metallo-sulfur cluster cysteine metabolic process response to selenium ion cysteine desulfurase activity xyloglucan 6-xylosyltransferase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity selenocysteine lyase activity 3'-phospho-5'-adenylyl sulfate transmembrane transport selenium compound metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc L-alanine biosynthesis III Selenocompound metabolism chloroplastic endopeptidase Clp complex molybdenum cofactor biosynthesis xyloglucan biosynthesis Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family MAP kinase activity integral component of endoplasmic reticulum membrane integral component of Golgi membrane Cell cycle - Caulobacter carbohydrate transport MAPK cascade cell part chloroplast thylakoid serine-type endopeptidase activity MAPK signaling pathway - plant pyridoxal phosphate binding chloroplast envelope proteolysis intracellular chloroplast stroma | details |
| CFinderADM001681 | aspartate-tRNA ligase activity protein maturation by iron-sulfur cluster transfer tRNA aminoacylation for protein translation chloroplast avoidance movement protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway chloroplast accumulation movement cell morphogenesis tRNA dihydrouridine synthase activity ESCRT II complex ferrous iron binding tRNA processing iron-sulfur cluster assembly structural molecule activity 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding Transcription_related, Transcription factor: MYB cytosol mitochondrial matrix Aminoacyl-tRNA biosynthesis protein homodimerization activity Endocytosis chloroplast envelope nucleic acid binding | details |
| CFinderADM001685 | aspartate-tRNA ligase activity protein maturation by iron-sulfur cluster transfer tRNA aminoacylation for protein translation ferrous iron binding iron-sulfur cluster assembly Aminoacyl-tRNA biosynthesis chloroplast 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding mitochondrial matrix chloroplast envelope nucleic acid binding | details |
| CFinderADM001847 | chloroplast part 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity epoxide hydrolase activity 3'-phospho-5'-adenylyl sulfate transmembrane transport heme biosynthesis I (aerobic) heme biosynthetic process single-organism transport integral component of endoplasmic reticulum membrane integral component of Golgi membrane 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) Porphyrin and chlorophyll metabolism carbohydrate transport membrane part thylakoid single-organism cellular process protein transport protein transporter activity ATPase activity transport oxidoreductase activity nucleotide binding | details |
| CFinderADM002149 | embryo development ending in seed dormancy mitochondrion Longevity regulating pathway - worm rRNA transcription from plastid promoter chloroplast envelope mitochondrial inner membrane presequence translocase complex viral envelope integral component of mitochondrial inner membrane protein import into mitochondrial matrix RNA splicing protein channel activity metallopeptidase activity Transcription_related, Transcription regulator: mTERF ATP-dependent peptidase activity double-stranded DNA binding plastid proteolysis regulation of transcription, DNA-templated | details |
Expression profiles
 Show details about module gene expression profiling |