CFinderADM001346's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| (+)-camphor biosynthesis | 6.93E-06 | plantCyc |
| Transcription_related, Transcription factor: C2C2-CO-like | 1.37E-05 | TF family |
| 3'-phospho-5'-adenylyl sulfate transmembrane transport | 2.93E-05 | GO:1902559 |
| 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity | 2.93E-05 | GO:0046964 |
| Cytochrome_P450, Cytochrome P450: CYP81D | 3.43E-05 | CYP450 family |
| integral component of endoplasmic reticulum membrane | 4.69E-05 | GO:0030176 |
| integral component of Golgi membrane | 4.69E-05 | GO:0030173 |
| matairesinol biosynthesis | 8.82E-05 | plantCyc |
| indole glucosinolate metabolic process | 0.000148898 | GO:0042343 |
| defense response to other organism | 0.000148898 | GO:0098542 |
| sesamin biosynthesis | 0.000190127 | plantCyc |
| carbohydrate transport | 0.000361227 | GO:0008643 |
| secondary metabolite biosynthetic process | 0.001919705 | GO:0044550 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 0.004916988 | GO:0016709 |
| regulation of transcription, DNA-templated | 0.034933084 | GO:0006355 |
| oxidoreductase activity | 0.041834613 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010918 | AT1G78600 (4.00E-16) | BBX22|B-box domain protein 22; DBB3|DOUBLE B-BOX 3; LZF1|light-regulated zinc finger protein 1; STH3|SALT TOLERANCE HOMOLOG 3 |
| CRO_T016616 | AT1G14360 (7.00E-15) | UTR3|UDP-galactose transporter 3 |
| CRO_T027601 | AT3G51680 (2.00E-40) | SDR2|short-chain dehydrogenase/reductase 2 |
| CRO_T031282 | AT4G37320 (4.00E-107) | CYP81D5|cytochrome P450, family 81, subfamily D, polypeptide 5 |
| CRO_T032415 | AT2G14910 (3.00E-95) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000892 | brassinosteroids inactivation monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidation-reduction process Cytochrome_P450, Cytochrome P450: CYP720A Cytochrome_P450, Cytochrome P450: CYP721A Cytochrome_P450, Cytochrome P450: CYP734A diphosphomevalonate decarboxylase activity heme binding iron ion binding ferredoxin-NADP+ reductase activity isopentenyl diphosphate biosynthetic process, mevalonate pathway pyrimidine deoxyribonucleotides dephosphorylation mevalonate pathway I superpathway of scopolin and esculin biosynthesis secologanin synthase activity sulfotransferase activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor single-organism biosynthetic process organic substance biosynthetic process protein domain specific binding Monoterpenoid biosynthesis phosphate acquisition photosynthesis light reactions MAPK signaling pathway - yeast Brassinosteroid biosynthesis Transcription_related, Transcription factor: MYB-related O-methyltransferase activity plastoglobule integral component of membrane cell part membrane part cellular metabolic process brassinosteroid biosynthetic process aromatic compound biosynthetic process brassinosteroid homeostasis acid phosphatase activity sterol metabolic process phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Pyrimidine metabolism Glutathione metabolism Terpenoid backbone biosynthesis Transcription_related, Transcription factor: ERF multicellular organism development | details |
| CFinderADM000900 | TFIIK complex Transcription_related, Transcription factor: Alfin-like FAD diphosphatase activity flavin-containing compound metabolic process Cytochrome_P450, Cytochrome P450: CYP81D Taurine and hypotaurine metabolism positive regulation of phosphorylation of RNA polymerase II C-terminal domain anaerobic respiration positive regulation of cyclin-dependent protein serine/threonine kinase activity peptidyl-cysteine oxidation detection of hypoxia response to abiotic stimulus cyclin-dependent protein kinase holoenzyme complex Indole alkaloid biosynthesis cyclin-dependent protein serine/threonine kinase regulator activity sesamin biosynthesis positive regulation of transcription from RNA polymerase II promoter indole glucosinolate metabolic process defense response to other organism oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen hydrolase activity histone binding Basal transcription factors secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Purine metabolism | details |
| CFinderADM001349 | iron incorporation into metallo-sulfur cluster cysteine metabolic process response to selenium ion cysteine desulfurase activity xyloglucan 6-xylosyltransferase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity selenocysteine lyase activity 3'-phospho-5'-adenylyl sulfate transmembrane transport selenium compound metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc L-alanine biosynthesis III Selenocompound metabolism chloroplastic endopeptidase Clp complex molybdenum cofactor biosynthesis xyloglucan biosynthesis Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family MAP kinase activity integral component of endoplasmic reticulum membrane integral component of Golgi membrane Cell cycle - Caulobacter carbohydrate transport MAPK cascade cell part chloroplast thylakoid serine-type endopeptidase activity MAPK signaling pathway - plant pyridoxal phosphate binding chloroplast envelope proteolysis intracellular chloroplast stroma | details |
| CFinderADM001512 | strigolactone biosynthetic process Cytochrome_P450, Cytochrome P450: CYP81D secondary shoot formation 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) indole glucosinolate metabolic process defense response to other organism hydrolase activity Ubiquinone and other terpenoid-quinone biosynthesis sesamin biosynthesis secondary metabolite biosynthetic process small-subunit processome ligase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen nucleolus metabolic process RNA binding | details |
| CFinderADM001684 | embryo development ending in seed dormancy mitochondrion rRNA transcription from plastid promoter chloroplast envelope 3'-phospho-5'-adenylyl sulfate transmembrane transport aspartate-tRNA ligase activity 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity viral envelope integral component of Golgi membrane integral component of endoplasmic reticulum membrane tRNA aminoacylation for protein translation Transcription_related, Transcription regulator: mTERF metallopeptidase activity RNA splicing vesicle docking vesicle fusion carbohydrate transport ATP-dependent peptidase activity double-stranded DNA binding Aminoacyl-tRNA biosynthesis SNARE binding SNAP receptor activity SNARE complex endomembrane system plastid intracellular protein transport ATP binding proteolysis nucleic acid binding | details |
| CFinderADM001847 | chloroplast part 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity epoxide hydrolase activity 3'-phospho-5'-adenylyl sulfate transmembrane transport heme biosynthesis I (aerobic) heme biosynthetic process single-organism transport integral component of endoplasmic reticulum membrane integral component of Golgi membrane 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) Porphyrin and chlorophyll metabolism carbohydrate transport membrane part thylakoid single-organism cellular process protein transport protein transporter activity ATPase activity transport oxidoreductase activity nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |