CFinderADM001707's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: RAV | 6.55E-06 | TF family |
| transcription, DNA-templated | 1.39E-05 | GO:0006351 |
| cinnamic acid biosynthetic process | 1.39E-05 | GO:0009800 |
| L-phenylalanine catabolic process | 1.39E-05 | GO:0006559 |
| phenylpropanoid biosynthesis, initial reactions | 2.42E-05 | plantCyc |
| Phenylalanine metabolism | 2.47E-05 | KEGG pathway |
| phenylalanine ammonia-lyase activity | 3.45E-05 | GO:0045548 |
| trans-cinnamoyl-CoA biosynthesis | 3.81E-05 | plantCyc |
| regulation of transcription, DNA-templated | 7.35E-05 | GO:0006355 |
| response to ethylene | 0.000227297 | GO:0009723 |
| DNA binding | 0.000230742 | GO:0003677 |
| Transcription_related, Transcription factor: MYB-related | 0.000266903 | TF family |
| suberin monomers biosynthesis | 0.000567171 | plantCyc |
| nucleus | 0.002596785 | GO:0005634 |
| transcription factor activity, sequence-specific DNA binding | 0.014144182 | GO:0003700 |
| RNA binding | 0.014144182 | GO:0003723 |
| mitochondrion | 0.046837838 | GO:0005739 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008469 | AT5G54890 (7.00E-131) | mCSF2|mitochondrial CAF-like splicing factor 2 |
| CRO_T013529 | AT2G37040 (0) | PAL1|PHE ammonia lyase 1 |
| CRO_T018690 | AT2G38090 (2.00E-29) | Duplicated homeodomain-like superfamily protein |
| CRO_T031165 | AT2G30470 (2.00E-14) | HSI2|high-level expression of sugar-inducible gene 2; VAL1|VP1/ABI3-LIKE 1 |
| CRO_T031167 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000863 | outer membrane zinc ion binding Prion diseases Ubiquitin_Proteasome_system, E2: UBC ligase activity protein dimerization activity Protein processing in endoplasmic reticulum | details |
| CFinderADM001619 | Transcription_related, Transcription factor: EIL response to zinc ion regulation of sequestering of zinc ion Transcription_related, Transcription factor: MYB-related regulation of transcription, DNA-templated zinc II ion transmembrane transport response to ethylene potassium ion transmembrane transport potassium ion transmembrane transporter activity zinc ion transmembrane transporter activity integral component of membrane nucleus amino acid binding MAPK signaling pathway - plant ATPase activity, coupled to transmembrane movement of substances transmembrane transport transcription, DNA-templated metabolic process transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001705 | Transcription_related, Transcription factor: RAV transcription, DNA-templated regulation of transcription, DNA-templated response to ethylene DNA binding response to stimulus Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: OTU nucleus Ubiquitin_Proteasome_system, E3 adaptor: F-box transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM001706 | AP-5 adaptor complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: RAV Glycosaminoglycan degradation Ubiquitin_Proteasome_system, DUB: OTU transcription factor activity, sequence-specific DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |