CFinderADM001710's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutamine N-phenylacetyltransferase activity | 4.52E-05 | GO:0047947 |
| Transcription_related, Transcription factor: NF-YA | 0.000138295 | TF family |
| sucrose-phosphate synthase activity | 0.000158083 | GO:0046524 |
| trehalose-phosphatase activity | 0.000180567 | GO:0004805 |
| sucrose synthase activity | 0.000293097 | GO:0016157 |
| sucrose metabolic process | 0.000321035 | GO:0005985 |
| trehalose biosynthetic process | 0.000321035 | GO:0005992 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000321711 | cazy family |
| Glycosaminoglycan degradation | 0.000606743 | KEGG pathway |
| pentose phosphate pathway (non-oxidative branch) | 0.000745953 | plantCyc |
| poly(A) RNA binding | 0.000898858 | GO:0044822 |
| Insulin signaling pathway | 0.000981302 | KEGG pathway |
| spliceosomal complex | 0.00104657 | GO:0005681 |
| ethylene biosynthesis I (plants) | 0.001113727 | plantCyc |
| flavonol biosynthesis | 0.001113727 | plantCyc |
| Rubisco shunt | 0.001113727 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.001113727 | plantCyc |
| sucrose biosynthesis II | 0.001113727 | plantCyc |
| Antigen processing and presentation | 0.001122644 | KEGG pathway |
| syringetin biosynthesis | 0.001126967 | plantCyc |
| flavonoid biosynthesis (in equisetum) | 0.001149261 | plantCyc |
| mRNA splicing, via spliceosome | 0.002472956 | GO:0000398 |
| Transcription_related, Transcription factor: bHLH | 0.003335199 | TF family |
| ATP-dependent RNA helicase activity | 0.004860097 | GO:0004004 |
| dephosphorylation | 0.005228769 | GO:0016311 |
| dioxygenase activity | 0.008201483 | GO:0051213 |
| protein dimerization activity | 0.010101726 | GO:0046983 |
| Starch and sucrose metabolism | 0.016515195 | KEGG pathway |
| Spliceosome | 0.017630256 | KEGG pathway |
| Carbon metabolism | 0.029662377 | KEGG pathway |
| Golgi apparatus | 0.031601956 | GO:0005794 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000287 | AT1G12230 (2.00E-132) | Aldolase superfamily protein |
| CRO_T003321 | AT1G72470 (8.00E-37) | ATEXO70D1|exocyst subunit exo70 family protein D1 |
| CRO_T004285 | AT1G04920 (0) | ATSPS3F|sucrose phosphate synthase 3F |
| CRO_T006528 | AT5G27730 (8.00E-98) | Protein of unknown function (DUF1624) |
| CRO_T015411 | AT2G20180 (8.00E-34) | PIF1|PHY-INTERACTING FACTOR 1; PIL5|phytochrome interacting factor 3-like 5 |
| CRO_T026392 | AT1G17590 (2.00E-31) | NF-YA8|nuclear factor Y, subunit A8 |
| CRO_T032010 | AT5G13010 (4.00E-98) | EMB3011|embryo defective 3011 |
| CRO_T032125 | AT4G10490 (2.00E-57) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001461 | Fluorobenzoate degradation trehalose-phosphatase activity pentose phosphate pathway (non-oxidative branch) trehalose biosynthetic process ethylene biosynthesis I (plants) flavonoid biosynthesis (in equisetum) flavonol biosynthesis Rubisco shunt syringetin biosynthesis protein processing metalloendopeptidase activity response to stress dephosphorylation embryo development ending in seed dormancy dioxygenase activity Carbon metabolism hydrolase activity | details |
| CFinderADM001725 | lipoate biosynthesis and incorporation I Lipoic acid metabolism lipoate synthase activity protein lipoylation lipoate biosynthetic process Glycosaminoglycan degradation intra-Golgi vesicle-mediated transport Golgi transport complex spliceosomal complex poly(A) RNA binding mRNA splicing, via spliceosome 4 iron, 4 sulfur cluster binding ATP-dependent RNA helicase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM001893 | glutamine N-phenylacetyltransferase activity sucrose-phosphate synthase activity sucrose metabolic process Glycosaminoglycan degradation sucrose synthase activity protein processing formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II metalloendopeptidase activity Transcription_related, Transcription factor: NAC Starch and sucrose metabolism Golgi apparatus integral component of membrane zinc ion binding | details |
| CFinderADM001967 | phytol salvage pathway phytol kinase activity 5-deoxystrigol biosynthesis Glycosaminoglycan degradation vitamin E biosynthetic process Arginine and proline metabolism L-ascorbic acid binding Transcription_related, Transcription factor: MYB oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen integral component of membrane iron ion binding phosphorylation chloroplast thylakoid membrane | details |
| CFinderADM002081 | myristoyl-[acyl-carrier-protein] hydrolase activity palmitoyl-[acyl-carrier-protein] hydrolase activity oleoyl-[acyl-carrier-protein] hydrolase activity Protein_kinases_phosphatases, PPC:1.12.1: Leucine Rich Repeat Kinase X Fatty acid biosynthesis Glycosaminoglycan degradation pyruvate decarboxylation to acetyl CoA oleate biosynthesis I (plants) Insulin signaling pathway chloroplast part transferase activity, transferring acyl groups fatty acid biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Carbon metabolism protein kinase activity protein phosphorylation | details |
| CFinderADM002143 | cytoplasm nucleus DNA ligase (ATP) activity NAD+ ADP-ribosyltransferase activity protein ADP-ribosylation lagging strand elongation double-strand break repair via nonhomologous end joining DNA ligation involved in DNA repair Glycosaminoglycan degradation Base excision repair | details |
Expression profiles
 Show details about module gene expression profiling |