CFinderADM001461's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Fluorobenzoate degradation | 9.60E-06 | KEGG pathway |
| trehalose-phosphatase activity | 0.000154311 | GO:0004805 |
| pentose phosphate pathway (non-oxidative branch) | 0.000282736 | plantCyc |
| trehalose biosynthetic process | 0.000449542 | GO:0005992 |
| ethylene biosynthesis I (plants) | 0.000493814 | plantCyc |
| flavonoid biosynthesis (in equisetum) | 0.000582128 | plantCyc |
| flavonol biosynthesis | 0.000582128 | plantCyc |
| Rubisco shunt | 0.000582128 | plantCyc |
| syringetin biosynthesis | 0.000582128 | plantCyc |
| protein processing | 0.000640938 | GO:0016485 |
| metalloendopeptidase activity | 0.001922394 | GO:0004222 |
| response to stress | 0.002339122 | GO:0006950 |
| dephosphorylation | 0.003015016 | GO:0016311 |
| embryo development ending in seed dormancy | 0.003015016 | GO:0009793 |
| dioxygenase activity | 0.006272434 | GO:0051213 |
| Carbon metabolism | 0.011189502 | KEGG pathway |
| hydrolase activity | 0.044718528 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000287 | AT1G12230 (2.00E-132) | Aldolase superfamily protein |
| CRO_T015661 | AT3G03270 (0.000000009) | Adenine nucleotide alpha hydrolases-like superfamily protein |
| CRO_T019327 | AT1G20300 (2.00E-22) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T019405 | AT5G42390 (0) | SPP|stromal processing peptidase |
| CRO_T026015 | AT2G32520 (6.00E-75) | alpha/beta-Hydrolases superfamily protein |
| CRO_T032125 | AT4G10490 (2.00E-57) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001079 | benzoyl-β-D-glucopyranose biosynthesis salicylate glucosides biosynthesis IV mature ribosome assembly ribosomal large subunit binding ribosomal large subunit biogenesis ribosome binding response to stress translational initiation flavonoid glucuronidation translation initiation factor activity quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity flavonoid biosynthetic process nucleolus formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolase activity oxidoreductase activity | details |
| CFinderADM001550 | methotrexate transport 5-formyltetrahydrofolate transport folic acid transport methotrexate transporter activity 5-formyltetrahydrofolate transporter activity Fluorobenzoate degradation chloroplast inner membrane chloroplast amino acid transmembrane transport Plant-pathogen interaction calcium ion binding hydrolase activity chloroplast envelope integral component of membrane | details |
| CFinderADM001654 | Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I Transcription_related, Transcription regulator: PHD response to stress adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 oxidoreductase activity Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001710 | glutamine N-phenylacetyltransferase activity Transcription_related, Transcription factor: NF-YA sucrose-phosphate synthase activity trehalose-phosphatase activity sucrose synthase activity sucrose metabolic process trehalose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Glycosaminoglycan degradation pentose phosphate pathway (non-oxidative branch) poly(A) RNA binding Insulin signaling pathway spliceosomal complex ethylene biosynthesis I (plants) flavonol biosynthesis Rubisco shunt sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II Antigen processing and presentation syringetin biosynthesis flavonoid biosynthesis (in equisetum) mRNA splicing, via spliceosome Transcription_related, Transcription factor: bHLH ATP-dependent RNA helicase activity dephosphorylation dioxygenase activity protein dimerization activity Starch and sucrose metabolism Spliceosome Carbon metabolism Golgi apparatus | details |
| CFinderADM001765 | hydroxyjasmonate sulfate biosynthesis indole-3-acetate activation I wogonin metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Glycosaminoglycan degradation baicalein degradation (hydrogen peroxide detoxification) SCF ubiquitin ligase complex SCF-dependent proteasomal ubiquitin-dependent protein catabolic process hydrolase activity, acting on glycosyl bonds response to stress formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3 adaptor: F-box carbohydrate metabolic process metabolic process hydrolase activity | details |
| CFinderADM001973 | Pyruvate metabolism response to stress Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: ERF Ubiquitin_Proteasome_system, E3 adaptor: F-box adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein kinase activity protein phosphorylation | details |
| CFinderADM002218 | NuA4 histone acetyltransferase complex regulation of timing of transition from vegetative to reproductive phase histone H4-K5 acetylation regulation of flower development ethylene biosynthesis I (plants) leucodelphinidin biosynthesis pinobanksin biosynthesis Transcription_related, Transcription regulator: PHD Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) response to stress Ubiquitin_Proteasome_system, E3: RING oxidoreductase activity regulation of transcription, DNA-templated | details |
| CFinderADM002270 | Fluorobenzoate degradation daphnetin modification chromoplast trans-lycopene biosynthesis II (plants) carotenoid biosynthetic process Pyruvate metabolism lactoylglutathione lyase activity sesaminol glucoside biosynthesis Carotenoid biosynthesis chloroplast flavonoid glucuronidation flavonoid biosynthetic process quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen intracellular membrane-bounded organelle catalytic activity | details |
Expression profiles
 Show details about module gene expression profiling |