CFinderADM001729's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-glutamate import | 1.45E-05 | GO:0051938 |
| alanyl-tRNA aminoacylation | 1.45E-05 | GO:0006419 |
| L-glutamate transmembrane transport | 1.45E-05 | GO:0089711 |
| Ser-tRNA(Ala) hydrolase activity | 1.66E-05 | GO:0002196 |
| L-glutamate transmembrane transporter activity | 1.66E-05 | GO:0005313 |
| ferredoxin-NADP+ reductase activity | 1.66E-05 | GO:0004324 |
| L-arginine import | 1.81E-05 | GO:0043091 |
| L-lysine transmembrane transport | 2.17E-05 | GO:1903401 |
| alanine-tRNA ligase activity | 2.49E-05 | GO:0004813 |
| L-lysine transmembrane transporter activity | 2.49E-05 | GO:0015189 |
| regulation of translational fidelity | 9.41E-05 | GO:0006450 |
| alkaloid metabolic process | 0.000108496 | GO:0009820 |
| tRNA binding | 0.000125494 | GO:0000049 |
| Fatty acid elongation | 0.000181858 | KEGG pathway |
| photosynthesis light reactions | 0.00041554 | plantCyc |
| very long chain fatty acid biosynthesis I | 0.000630601 | plantCyc |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.001616395 | GO:0016747 |
| Photosynthesis | 0.002018106 | KEGG pathway |
| fatty acid biosynthetic process | 0.002038216 | GO:0006633 |
| antiporter activity | 0.002195945 | GO:0015297 |
| oxidation-reduction process | 0.003658617 | GO:0055114 |
| integral component of plasma membrane | 0.010702291 | GO:0005887 |
| oxidoreductase activity | 0.031185643 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002230 | AT1G30510 (2.00E-161) | ATRFNR2|root FNR 2 |
| CRO_T013270 | AT1G60690 (3.00E-93) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T013949 | AT1G04220 (0) | KCS2|3-ketoacyl-CoA synthase 2 |
| CRO_T017980 | AT3G46730 (2.00E-53) | NB-ARC domain-containing disease resistance protein |
| CRO_T025341 | AT1G17120 (0) | CAT8|cationic amino acid transporter 8 |
| CRO_T027761 | AT3G16565 (2.00E-44) | alanine-tRNA ligases; nucleic acid binding; ligases, forming aminoacyl-tRNA and related compounds; nucleotide binding; ATP binding |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000892 | brassinosteroids inactivation monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidation-reduction process Cytochrome_P450, Cytochrome P450: CYP720A Cytochrome_P450, Cytochrome P450: CYP721A Cytochrome_P450, Cytochrome P450: CYP734A diphosphomevalonate decarboxylase activity heme binding iron ion binding ferredoxin-NADP+ reductase activity isopentenyl diphosphate biosynthetic process, mevalonate pathway pyrimidine deoxyribonucleotides dephosphorylation mevalonate pathway I superpathway of scopolin and esculin biosynthesis secologanin synthase activity sulfotransferase activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor single-organism biosynthetic process organic substance biosynthetic process protein domain specific binding Monoterpenoid biosynthesis phosphate acquisition photosynthesis light reactions MAPK signaling pathway - yeast Brassinosteroid biosynthesis Transcription_related, Transcription factor: MYB-related O-methyltransferase activity plastoglobule integral component of membrane cell part membrane part cellular metabolic process brassinosteroid biosynthetic process aromatic compound biosynthetic process brassinosteroid homeostasis acid phosphatase activity sterol metabolic process phenylpropanoids methylation (ice plant) suberin monomers biosynthesis Pyrimidine metabolism Glutathione metabolism Terpenoid backbone biosynthesis Transcription_related, Transcription factor: ERF multicellular organism development | details |
| CFinderADM001730 | alanyl-tRNA aminoacylation Ser-tRNA(Ala) hydrolase activity alanine-tRNA ligase activity Fatty acid elongation regulation of translational fidelity tRNA binding leucopelargonidin and leucocyanidin biosynthesis coenzyme binding very long chain fatty acid biosynthesis I fatty acid biosynthetic process Phenylpropanoid biosynthesis transferase activity, transferring acyl groups other than amino-acyl groups catalytic activity | details |
| CFinderADM002250 | glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) Carbon metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc ferredoxin-NADP+ reductase activity Other types of O-glycan biosynthesis fructose-bisphosphate aldolase activity potassium ion binding pyruvate kinase activity intracellular organelle photosynthesis light reactions sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Rubisco shunt gluconeogenesis I Golgi membrane Photosynthesis cell wall organization transferase activity, transferring glycosyl groups magnesium ion binding kinase activity cytoplasm | details |
| CFinderADM002271 | L-glutamate transmembrane transport L-glutamate import L-arginine import L-lysine transmembrane transport L-glutamate transmembrane transporter activity L-lysine transmembrane transporter activity positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly proteasome-activating ATPase activity cytosolic proteasome complex nuclear proteasome complex TBP-class protein binding proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process Proteasome ER to Golgi vesicle-mediated transport antiporter activity integral component of plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |