CFinderADM000892's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| brassinosteroids inactivation | 8.28E-06 | plantCyc |
| monooxygenase activity | 1.11E-05 | GO:0004497 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.11E-05 | GO:0016705 |
| oxidation-reduction process | 8.98E-05 | GO:0055114 |
| Cytochrome_P450, Cytochrome P450: CYP720A | 0.000218608 | CYP450 family |
| Cytochrome_P450, Cytochrome P450: CYP721A | 0.000218608 | CYP450 family |
| Cytochrome_P450, Cytochrome P450: CYP734A | 0.000363601 | CYP450 family |
| diphosphomevalonate decarboxylase activity | 0.000435889 | GO:0004163 |
| heme binding | 0.000435889 | GO:0020037 |
| iron ion binding | 0.000435889 | GO:0005506 |
| ferredoxin-NADP+ reductase activity | 0.000642476 | GO:0004324 |
| isopentenyl diphosphate biosynthetic process, mevalonate pathway | 0.001121667 | GO:0019287 |
| pyrimidine deoxyribonucleotides dephosphorylation | 0.001408691 | plantCyc |
| mevalonate pathway I | 0.00247271 | plantCyc |
| superpathway of scopolin and esculin biosynthesis | 0.00247271 | plantCyc |
| secologanin synthase activity | 0.002556789 | GO:0050616 |
| sulfotransferase activity | 0.002556789 | GO:0008146 |
| oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | 0.002556789 | GO:0050664 |
| single-organism biosynthetic process | 0.0026092 | GO:0044711 |
| organic substance biosynthetic process | 0.003347829 | GO:1901576 |
| protein domain specific binding | 0.004822522 | GO:0019904 |
| Monoterpenoid biosynthesis | 0.005605872 | KEGG pathway |
| phosphate acquisition | 0.008143471 | plantCyc |
| photosynthesis light reactions | 0.008143471 | plantCyc |
| MAPK signaling pathway - yeast | 0.009276477 | KEGG pathway |
| Brassinosteroid biosynthesis | 0.009751889 | KEGG pathway |
| Transcription_related, Transcription factor: MYB-related | 0.011507294 | TF family |
| O-methyltransferase activity | 0.014511433 | GO:0008171 |
| plastoglobule | 0.016191564 | GO:0010287 |
| integral component of membrane | 0.016191564 | GO:0016021 |
| cell part | 0.016191564 | GO:0044464 |
| membrane part | 0.016321093 | GO:0044425 |
| cellular metabolic process | 0.020024137 | GO:0044237 |
| brassinosteroid biosynthetic process | 0.020024137 | GO:0016132 |
| aromatic compound biosynthetic process | 0.020024137 | GO:0019438 |
| brassinosteroid homeostasis | 0.020024137 | GO:0010268 |
| acid phosphatase activity | 0.020758549 | GO:0003993 |
| sterol metabolic process | 0.021552727 | GO:0016125 |
| phenylpropanoids methylation (ice plant) | 0.022607745 | plantCyc |
| suberin monomers biosynthesis | 0.022607745 | plantCyc |
| Pyrimidine metabolism | 0.023858481 | KEGG pathway |
| Glutathione metabolism | 0.031038799 | KEGG pathway |
| Terpenoid backbone biosynthesis | 0.034192905 | KEGG pathway |
| Transcription_related, Transcription factor: ERF | 0.037069907 | TF family |
| multicellular organism development | 0.045502071 | GO:0007275 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000484 | AT1G08820 (1.00E-56) | VAP27-2|vamp/synaptobrevin-associated protein 27-2 |
| CRO_T002169 | AT4G19230 (5.00E-55) | CYP707A1|cytochrome P450, family 707, subfamily A, polypeptide 1 |
| CRO_T002230 | AT1G30510 (2.00E-161) | ATRFNR2|root FNR 2 |
| CRO_T003687 | - | - |
| CRO_T009313 | AT4G25490 (5.00E-24) | CBF1|C-repeat/DRE binding factor 1; DREB1B|DRE BINDING PROTEIN 1B |
| CRO_T009405 | AT3G50620 (1.00E-134) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T010055 | AT1G31800 (7.00E-27) | CYP97A3|cytochrome P450, family 97, subfamily A, polypeptide 3; LUT5|LUTEIN DEFICIENT 5 |
| CRO_T011515 | AT3G54250 (0) | GHMP kinase family protein |
| CRO_T012243 | AT3G22190 (6.00E-30) | IQD5|IQ-domain 5 |
| CRO_T012374 | AT1G74590 (2.00E-41) | ATGSTU10|GLUTATHIONE S-TRANSFERASE TAU 10 |
| CRO_T015689 | AT1G45688 (5.00E-21) | unknown protein |
| CRO_T016879 | AT3G10130 (4.00E-90) | SOUL heme-binding family protein |
| CRO_T016910 | AT3G45650 (2.00E-127) | NAXT1|nitrate excretion transporter1; NPF2.7|NRT1/ PTR family 2.7 |
| CRO_T017895 | AT5G54160 (2.00E-106) | ATOMT1|O-methyltransferase 1; COMT1|caffeate O-methyltransferase 1 |
| CRO_T018823 | AT1G62510 (4.00E-21) | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| CRO_T018898 | AT5G49730 (9.00E-26) | ATFRO6|ferric reduction oxidase 6 |
| CRO_T020541 | AT3G25400 (9.00E-41) | |
| CRO_T021254 | AT1G03230 (4.00E-104) | Eukaryotic aspartyl protease family protein |
| CRO_T022864 | AT5G61830 (9.00E-24) | NAD(P)-binding Rossmann-fold superfamily protein |
| CRO_T023905 | - | - |
| CRO_T024548 | AT3G14620 (5.00E-111) | CYP72A8|cytochrome P450, family 72, subfamily A, polypeptide 8 |
| CRO_T025539 | AT3G20500 (0) | ATPAP18|PURPLE ACID PHOSPHATASE 18 |
| CRO_T029971 | AT3G63280 (6.00E-35) | ATNEK4|NIMA-related kinase 4 |
| CRO_T030976 | AT1G78220 (3.00E-55) | GF14 PI|GF 14 PI CHAIN; GRF13|general regulatory factor 13 |
| CRO_T032415 | AT2G14910 (3.00E-95) | unknown protein |
| CRO_T033005 | AT1G57560 (2.00E-43) | AtMYB50|myb domain protein 50 |
| CRO_T033375 | AT3G01920 (1.00E-96) | DHBP synthase RibB-like alpha/beta domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000124 | methyl indole-3-acetate interconversion pyruvate fermentation to lactate L-lactate dehydrogenase activity jasmonate O-methyltransferase activity adenine phosphoribosyltransferase activity geranyl diphosphate biosynthesis (3S)-linalool biosynthesis AMP salvage adenine salvage adenine and adenosine salvage II hydrolase activity, hydrolyzing O-glycosyl compounds polyisoprenoid biosynthesis trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) crocetin esters biosynthesis homogalacturonan biosynthesis carboxylic acid metabolic process pollen sperm cell differentiation cellular component organization methylation ethylene-activated signaling pathway polysaccharide catabolic process glycerol-3-phosphate 2-O-acyltransferase activity isoprenoid biosynthetic process flavonoid metabolic process glycerol transport water transport cellular water homeostasis transferase activity, transferring alkyl or aryl (other than methyl) groups toxin catabolic process carbohydrate metabolic process water channel activity glycerol channel activity membrane plastoglobule cytoplasm UDP-glucosyltransferase activity ion transmembrane transport secologanin and strictosidine biosynthesis non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI single-organism process glutathione metabolic process peptidyl-tyrosine phosphorylation Transcription_related, Transcription factor: G2-like glutathione transferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc hydrogen peroxide catabolic process lyase activity Glutathione metabolism Glycerolipid metabolism Glycolysis / Gluconeogenesis NF-kappa B signaling pathway Protein export Terpenoid backbone biosynthesis polysaccharide binding | details |
| CFinderADM001287 | acireductone dioxygenase [iron(II)-requiring] activity S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-methionine biosynthetic process from methylthioadenosine Cysteine and methionine metabolism iron ion binding | details |
| CFinderADM001346 | (+)-camphor biosynthesis Transcription_related, Transcription factor: C2C2-CO-like 3'-phospho-5'-adenylyl sulfate transmembrane transport 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity Cytochrome_P450, Cytochrome P450: CYP81D integral component of endoplasmic reticulum membrane integral component of Golgi membrane matairesinol biosynthesis indole glucosinolate metabolic process defense response to other organism sesamin biosynthesis carbohydrate transport secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen regulation of transcription, DNA-templated oxidoreductase activity | details |
| CFinderADM001600 | One carbon pool by folate leucopelargonidin and leucocyanidin biosynthesis cellulose microfibril organization cell growth anchored component of membrane cell part membrane part Phenylpropanoid biosynthesis Transcription_related, Transcription factor: ERF coenzyme binding transcription, DNA-templated transcription factor activity, sequence-specific DNA binding catalytic activity | details |
| CFinderADM001718 | Cytochrome_P450, Cytochrome P450: CYP734A Brassinosteroid biosynthesis secologanin synthase activity brassinosteroids inactivation plastoglobule oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity chloroplast thylakoid membrane iron ion binding heme binding | details |
| CFinderADM001728 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity Cytochrome_P450, Cytochrome P450: CYP720A Cytochrome_P450, Cytochrome P450: CYP721A iron ion binding heme binding MAPK signaling pathway - yeast brassinosteroids inactivation protein domain specific binding calcium-dependent phospholipid binding integral component of membrane sterol metabolic process brassinosteroid homeostasis brassinosteroid biosynthetic process multicellular organism development Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII oxidation-reduction process calcium ion binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein serine/threonine kinase activity protein phosphorylation plasma membrane | details |
| CFinderADM001729 | L-glutamate import alanyl-tRNA aminoacylation L-glutamate transmembrane transport Ser-tRNA(Ala) hydrolase activity L-glutamate transmembrane transporter activity ferredoxin-NADP+ reductase activity L-arginine import L-lysine transmembrane transport alanine-tRNA ligase activity L-lysine transmembrane transporter activity regulation of translational fidelity alkaloid metabolic process tRNA binding Fatty acid elongation photosynthesis light reactions very long chain fatty acid biosynthesis I transferase activity, transferring acyl groups other than amino-acyl groups Photosynthesis fatty acid biosynthetic process antiporter activity oxidation-reduction process integral component of plasma membrane oxidoreductase activity | details |
| CFinderADM002250 | glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) Carbon metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc ferredoxin-NADP+ reductase activity Other types of O-glycan biosynthesis fructose-bisphosphate aldolase activity potassium ion binding pyruvate kinase activity intracellular organelle photosynthesis light reactions sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Rubisco shunt gluconeogenesis I Golgi membrane Photosynthesis cell wall organization transferase activity, transferring glycosyl groups magnesium ion binding kinase activity cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |