CFinderADM001731's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| plastid translation | 1.37E-05 | GO:0032544 |
| Transcription_related, Transcription factor: NF-YC | 2.47E-05 | TF family |
| vitamin E biosynthesis (tocopherols) | 2.82E-05 | plantCyc |
| prenyltransferase activity | 3.45E-05 | GO:0004659 |
| Antigen processing and presentation | 0.000535451 | KEGG pathway |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.000535451 | KEGG pathway |
| protein heterodimerization activity | 0.001580388 | GO:0046982 |
| unfolded protein binding | 0.001580388 | GO:0051082 |
| chloroplast thylakoid | 0.001708333 | GO:0009534 |
| cytosolic small ribosomal subunit | 0.001708333 | GO:0022627 |
| protein folding | 0.001895411 | GO:0006457 |
| Spliceosome | 0.007876747 | KEGG pathway |
| chloroplast envelope | 0.013968375 | GO:0009941 |
| Ribosome | 0.016993518 | KEGG pathway |
| chloroplast stroma | 0.024738415 | GO:0009570 |
| structural constituent of ribosome | 0.024869718 | GO:0003735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005023 | - | - |
| CRO_T007272 | AT1G08970 (7.00E-65) | HAP5C|HEME ACTIVATED PROTEIN 5C; NF-YC9|nuclear factor Y, subunit C9 |
| CRO_T015460 | AT4G24280 (0) | cpHsc70-1|chloroplast heat shock protein 70-1 |
| CRO_T021327 | AT1G79850 (3.00E-33) | PDE347|PIGMENT DEFECTIVE 347; PRPS17|PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17; RPS17|ribosomal protein S17 |
| CRO_T025568 | AT2G18950 (1.00E-92) | ATHPT|HOMOGENTISATE PHYTYLTRANSFERASE; HPT1|homogentisate phytyltransferase 1; VTE2|VITAMIN E 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001732 | plastid translation prenyltransferase activity cuticular wax biosynthesis vitamin E biosynthesis (tocopherols) Ubiquinone and other terpenoid-quinone biosynthesis fatty acid biosynthetic process chloroplast thylakoid cytosolic small ribosomal subunit chloroplast envelope Ribosome chloroplast stroma iron ion binding structural constituent of ribosome oxidoreductase activity hydrolase activity | details |
| CFinderADM002035 | Transcription_related, Transcription factor: NF-YC membrane fusion Antigen processing and presentation SNARE interactions in vesicular transport metalloendopeptidase activity ATP-dependent peptidase activity SNAP receptor activity microtubule motor activity microtubule binding ATPase activity protein heterodimerization activity kinesin complex microtubule-based movement vesicle-mediated transport embryo development ending in seed dormancy ATP binding intracellular protein transport chloroplast envelope Golgi apparatus proteolysis oxidoreductase activity integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |