CFinderADM001757's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| aerobic respiration I (cytochrome c) | 1.00E-08 | plantCyc |
| Oxidative phosphorylation | 4.92E-06 | KEGG pathway |
| ubiquinol-cytochrome-c reductase activity | 0.000128666 | GO:0008121 |
| NAD/NADH phosphorylation and dephosphorylation | 0.000227968 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.000235408 | plantCyc |
| proteasome complex | 0.000260815 | GO:0000502 |
| Proteasome | 0.000351523 | KEGG pathway |
| respiratory chain | 0.000731091 | GO:0070469 |
| FMN binding | 0.000747364 | GO:0010181 |
| 2 iron, 2 sulfur cluster binding | 0.000747364 | GO:0051537 |
| 4 iron, 4 sulfur cluster binding | 0.000879573 | GO:0051539 |
| hydrogen ion transmembrane transport | 0.00141937 | GO:1902600 |
| oxidation-reduction process | 0.00141937 | GO:0055114 |
| NAD binding | 0.001465857 | GO:0051287 |
| NADH dehydrogenase (ubiquinone) activity | 0.001465857 | GO:0008137 |
| mitochondrial inner membrane | 0.001562719 | GO:0005743 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006837609 | cazy family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005189 | AT4G22980 (1.00E-105) | unknown protein |
| CRO_T013215 | AT5G01110 (2.00E-52) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T015428 | AT5G13430 (1.00E-76) | Ubiquinol-cytochrome C reductase iron-sulfur subunit |
| CRO_T022852 | AT5G64760 (0) | RPN5B|regulatory particle non-ATPase subunit 5B |
| CRO_T028505 | AT5G08530 (0) | CI51|51 kDa subunit of complex I |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000763 | plant sterol biosynthesis regulation of membrane potential Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) potassium ion transmembrane transport protein phosphorylation voltage-gated potassium channel activity oxidoreductase activity protein serine/threonine kinase activity Transcription_related, Transcription factor: G2-like helicase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: ERF Spliceosome kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 ATP binding | details |
| CFinderADM000784 | Starch and sucrose metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc racemase and epimerase activity, acting on amino acids and derivatives glycogen phosphorylase activity glycogen catabolic process ubiquinol-cytochrome-c reductase activity trehalose biosynthetic process nitrogen compound metabolic process aerobic respiration I (cytochrome c) amyloplast response to water deprivation 2 iron, 2 sulfur cluster binding identical protein binding respiratory chain hydrogen ion transmembrane transport mitochondrial inner membrane pyridoxal phosphate binding Oxidative phosphorylation transferase activity chloroplast stroma | details |
| CFinderADM000996 | pyrimidine ribonucleosides salvage II purine nucleosidase activity purine nucleoside catabolic process adenine and adenosine salvage II cytokinesis guanosine nucleotides degradation I ubiquinol-cytochrome-c reductase activity pyrimidine salvage pathway cellular water homeostasis water transport microtubule cytoskeleton organization glycerol transport adenosine nucleotides degradation I water channel activity glycerol channel activity Transcription_related, Transcription factor: B3 Pyrimidine metabolism aerobic respiration I (cytochrome c) ion transmembrane transport 2 iron, 2 sulfur cluster binding microtubule binding hydrogen ion transmembrane transport respiratory chain mitochondrial inner membrane transporter activity Oxidative phosphorylation transport integral component of plasma membrane integral component of membrane | details |
| CFinderADM001128 | hydrolase activity, hydrolyzing O-glycosyl compounds formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.5.3: Casein Kinase II Family 1,4-alpha-glucan branching enzyme activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc starch biosynthesis cation binding glycogen biosynthetic process Ribosome biogenesis in eukaryotes Starch and sucrose metabolism carbohydrate metabolic process protein serine/threonine kinase activity protein phosphorylation cytosol | details |
| CFinderADM001663 | DNA polymerase III complex pyrimidine ribonucleosides salvage II purine nucleoside catabolic process purine nucleosidase activity adenine and adenosine salvage II guanosine nucleotides degradation I ubiquinol-cytochrome-c reductase activity pyrimidine salvage pathway adenosine nucleotides degradation I glycerol transport cellular water homeostasis water transport DNA-directed DNA polymerase activity glycerol channel activity water channel activity DNA biosynthetic process Pyrimidine metabolism aerobic respiration I (cytochrome c) ion transmembrane transport 2 iron, 2 sulfur cluster binding DNA replication respiratory chain hydrogen ion transmembrane transport mitochondrial inner membrane integral component of plasma membrane Oxidative phosphorylation integral component of membrane | details |
| CFinderADM002109 | formation of glycosidic bonds, GlycosylTransferases: GTnc glycogen catabolic process glycogen phosphorylase activity ubiquinol-cytochrome-c reductase activity aerobic respiration I (cytochrome c) amyloplast response to water deprivation 2 iron, 2 sulfur cluster binding identical protein binding respiratory chain hydrogen ion transmembrane transport mitochondrial inner membrane pyridoxal phosphate binding Starch and sucrose metabolism Oxidative phosphorylation binding chloroplast stroma | details |
Expression profiles
 Show details about module gene expression profiling |