CFinderADM002109's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 1.41E-06 | cazy family |
| glycogen catabolic process | 2.56E-05 | GO:0005980 |
| glycogen phosphorylase activity | 5.36E-05 | GO:0008184 |
| ubiquinol-cytochrome-c reductase activity | 6.43E-05 | GO:0008121 |
| aerobic respiration I (cytochrome c) | 0.000231864 | plantCyc |
| amyloplast | 0.000397123 | GO:0009501 |
| response to water deprivation | 0.000629495 | GO:0009414 |
| 2 iron, 2 sulfur cluster binding | 0.000747364 | GO:0051537 |
| identical protein binding | 0.000840613 | GO:0042802 |
| respiratory chain | 0.001252124 | GO:0070469 |
| hydrogen ion transmembrane transport | 0.001440071 | GO:1902600 |
| mitochondrial inner membrane | 0.002676435 | GO:0005743 |
| pyridoxal phosphate binding | 0.004449764 | GO:0030170 |
| Starch and sucrose metabolism | 0.005632033 | KEGG pathway |
| Oxidative phosphorylation | 0.009648998 | KEGG pathway |
| binding | 0.017429418 | GO:0005488 |
| chloroplast stroma | 0.019790732 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007797 | AT3G29320 (0) | PHS1|alpha-glucan phosphorylase 1 |
| CRO_T009611 | AT3G14860 (3.00E-145) | NHL domain-containing protein |
| CRO_T015428 | AT5G13430 (1.00E-76) | Ubiquinol-cytochrome C reductase iron-sulfur subunit |
| CRO_T015995 | AT4G24230 (4.00E-14) | ACBP3|acyl-CoA-binding domain 3 |
| CRO_T016665 | AT4G25660 (3.00E-12) | PPPDE putative thiol peptidase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000784 | Starch and sucrose metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc racemase and epimerase activity, acting on amino acids and derivatives glycogen phosphorylase activity glycogen catabolic process ubiquinol-cytochrome-c reductase activity trehalose biosynthetic process nitrogen compound metabolic process aerobic respiration I (cytochrome c) amyloplast response to water deprivation 2 iron, 2 sulfur cluster binding identical protein binding respiratory chain hydrogen ion transmembrane transport mitochondrial inner membrane pyridoxal phosphate binding Oxidative phosphorylation transferase activity chloroplast stroma | details |
| CFinderADM000996 | pyrimidine ribonucleosides salvage II purine nucleosidase activity purine nucleoside catabolic process adenine and adenosine salvage II cytokinesis guanosine nucleotides degradation I ubiquinol-cytochrome-c reductase activity pyrimidine salvage pathway cellular water homeostasis water transport microtubule cytoskeleton organization glycerol transport adenosine nucleotides degradation I water channel activity glycerol channel activity Transcription_related, Transcription factor: B3 Pyrimidine metabolism aerobic respiration I (cytochrome c) ion transmembrane transport 2 iron, 2 sulfur cluster binding microtubule binding hydrogen ion transmembrane transport respiratory chain mitochondrial inner membrane transporter activity Oxidative phosphorylation transport integral component of plasma membrane integral component of membrane | details |
| CFinderADM001435 | Starch and sucrose metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc ErbB signaling pathway glycogen phosphorylase activity rRNA (uridine-N3-)-methyltransferase activity Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family glycogen catabolic process rRNA base methylation amyloplast Lysine degradation response to water deprivation identical protein binding pyridoxal phosphate binding hydrolase activity, hydrolyzing O-glycosyl compounds chloroplast stroma carbohydrate metabolic process protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001436 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Alfin-like glycogen catabolic process glycogen phosphorylase activity Transcription_related, Transcription factor: MIKC amyloplast response to water deprivation identical protein binding Starch and sucrose metabolism protein dimerization activity pyridoxal phosphate binding chloroplast stroma transcription factor activity, sequence-specific DNA binding transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001663 | DNA polymerase III complex pyrimidine ribonucleosides salvage II purine nucleoside catabolic process purine nucleosidase activity adenine and adenosine salvage II guanosine nucleotides degradation I ubiquinol-cytochrome-c reductase activity pyrimidine salvage pathway adenosine nucleotides degradation I glycerol transport cellular water homeostasis water transport DNA-directed DNA polymerase activity glycerol channel activity water channel activity DNA biosynthetic process Pyrimidine metabolism aerobic respiration I (cytochrome c) ion transmembrane transport 2 iron, 2 sulfur cluster binding DNA replication respiratory chain hydrogen ion transmembrane transport mitochondrial inner membrane integral component of plasma membrane Oxidative phosphorylation integral component of membrane | details |
| CFinderADM001757 | aerobic respiration I (cytochrome c) Oxidative phosphorylation ubiquinol-cytochrome-c reductase activity NAD/NADH phosphorylation and dephosphorylation aerobic respiration III (alternative oxidase pathway) proteasome complex Proteasome respiratory chain FMN binding 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding hydrogen ion transmembrane transport oxidation-reduction process NAD binding NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM002085 | GPI-anchor transamidase complex attachment of GPI anchor to protein Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |