CFinderADM001772's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| proteasome assembly | 3.23E-05 | GO:0043248 |
| proteasome regulatory particle, lid subcomplex | 3.39E-05 | GO:0008541 |
| spliceosomal complex assembly | 6.05E-05 | GO:0000245 |
| prespliceosome | 7.45E-05 | GO:0071010 |
| Prp19 complex | 7.45E-05 | GO:0000974 |
| catalytic step 1 spliceosome | 7.45E-05 | GO:0071012 |
| post-mRNA release spliceosomal complex | 7.45E-05 | GO:0071014 |
| structural molecule activity | 0.000178906 | GO:0005198 |
| acetylglucosaminyltransferase activity | 0.000178906 | GO:0008375 |
| precatalytic spliceosome | 0.000217056 | GO:0071011 |
| Viral carcinogenesis | 0.00034537 | KEGG pathway |
| nucleosome | 0.000371451 | GO:0000786 |
| catalytic step 2 spliceosome | 0.000371451 | GO:0071013 |
| Proteasome | 0.000620087 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000646855 | cazy family |
| ubiquitin-dependent protein catabolic process | 0.000817828 | GO:0006511 |
| protein heterodimerization activity | 0.001173183 | GO:0046982 |
| nucleus | 0.001412329 | GO:0005634 |
| Spliceosome | 0.005325343 | KEGG pathway |
| DNA binding | 0.036319803 | GO:0003677 |
| cytosol | 0.047139525 | GO:0005829 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004715 | AT1G07790 (1.00E-17) | HTB1|Histone superfamily protein |
| CRO_T018287 | AT2G41760 (2.00E-25) | unknown protein |
| CRO_T019846 | AT4G19006 (2.00E-160) | Proteasome component (PCI) domain protein |
| CRO_T021241 | AT5G41770 (1.00E-13) | crooked neck protein, putative / cell cycle protein, putative |
| CRO_T033527 | AT1G10880 (3.00E-112) | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001182 | proteasome regulatory particle, lid subcomplex nuclear cap binding complex Golgi medial cisterna RNA cap binding cis-Golgi network organic acid transmembrane transporter activity S-methyl-5-thioribose-1-phosphate isomerase activity guanyl-nucleotide exchange factor activity eukaryotic translation initiation factor 2B complex positive regulation of circadian rhythm response to far red light regulation of vesicle targeting, to, from or within Golgi proteasome assembly organic acid transmembrane transport mRNA cis splicing, via spliceosome Circadian rhythm L-methionine biosynthetic process from methylthioadenosine red, far-red light phototransduction structural molecule activity intra-Golgi vesicle-mediated transport regulation of translational initiation vesicle fusion ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding Transcription_related, Transcription factor: FAR1 positive regulation of GTPase activity positive regulation of transcription, DNA-templated SNARE complex protein transport translational initiation Proteasome SNARE interactions in vesicular transport ubiquitin-dependent protein catabolic process Golgi membrane translation initiation factor activity nucleus integral component of plasma membrane RNA transport Spliceosome transcription factor activity, sequence-specific DNA binding nucleotide binding | details |
| CFinderADM001254 | posttranscriptional gene silencing by RNA organ boundary specification between lateral organs and the meristem regulation of gene expression, epigenetic mRNA catabolic process production of small RNA involved in gene silencing by RNA ATP-dependent chromatin remodeling rRNA catabolic process RNA phosphodiester bond hydrolysis, exonucleolytic mRNA processing 3'-5'-exoribonuclease activity DNA-dependent ATPase activity nuclear exosome (RNase complex) cytoplasmic exosome (RNase complex) proteasome complex endonuclease activity mediator complex Viral carcinogenesis nucleosome rRNA processing Transcription_related, Transcription regulator: SNF2 chromatin binding Proteasome Transcription_related, Transcription factor: HB proteasome-mediated ubiquitin-dependent protein catabolic process RNA degradation vesicle-mediated transport protein heterodimerization activity Plant hormone signal transduction nucleus | details |
| CFinderADM001387 | post-mRNA release spliceosomal complex catalytic step 1 spliceosome Prp19 complex prespliceosome spliceosomal complex assembly precatalytic spliceosome catalytic step 2 spliceosome small GTPase mediated signal transduction Protein export GTP binding Spliceosome intracellular | details |
| CFinderADM001733 | generation of catalytic spliceosome for second transesterification step mRNA 3'-splice site recognition response to red light first spliceosomal transesterification activity post-spliceosomal complex Cul3-RING ubiquitin ligase complex post-mRNA release spliceosomal complex catalytic step 1 spliceosome Prp19 complex acetylglucosaminyltransferase activity Viral carcinogenesis nucleosome catalytic step 2 spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB protein heterodimerization activity protein ubiquitination nucleus ubiquitin-protein transferase activity Plant hormone signal transduction Spliceosome | details |
| CFinderADM002141 | Lysosome transporter activity transport deoxyribonucleoside diphosphate metabolic process ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor mitotic spindle assembly checkpoint deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase complex regulation of cell cycle nuclear envelope acetylglucosaminyltransferase activity Cell cycle - yeast MAPK signaling pathway Cell cycle multicellular organism development formation of glycosidic bonds, GlycosylTransferases: GTnc cellular process integral component of membrane calcium ion binding Purine metabolism | details |
| CFinderADM002195 | nuclear-transcribed mRNA catabolic process proteasome regulatory particle, lid subcomplex deoxyribonucleoside diphosphate metabolic process proteasome assembly Transcription_related, Transcription factor: G2-like deoxyribonucleotide biosynthetic process ribonucleoside-diphosphate reductase complex regulation of cell cycle ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor large ribosomal subunit rRNA binding histone acetyltransferase activity structural molecule activity histone acetylation cytoplasmic translation ribosomal large subunit assembly preribosome, large subunit precursor Proteasome rRNA processing multicellular organism development ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction nucleus cytosolic large ribosomal subunit Purine metabolism nucleolus GTP binding intracellular structural constituent of ribosome | details |
| CFinderADM002275 | response to red light Cul3-RING ubiquitin ligase complex glycosyl compound metabolic process acetylglucosaminyltransferase activity beta-glucosidase activity Glycerolipid metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Ubiquitin_Proteasome_system, E3 adaptor: BTB formation of glycosidic bonds, GlycosylTransferases: GTnc ubiquitin-protein transferase activity protein ubiquitination carbohydrate metabolic process | details |
| CFinderADM002297 | Spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc RNA cap binding mannosyltransferase activity mRNA cis splicing, via spliceosome nuclear cap binding complex GPI anchor biosynthetic process spliceosomal complex assembly post-mRNA release spliceosomal complex catalytic step 1 spliceosome Prp19 complex prespliceosome Glycosylphosphatidylinositol(GPI)-anchor biosynthesis precatalytic spliceosome catalytic step 2 spliceosome Plant-pathogen interaction endoplasmic reticulum membrane calcium ion binding nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |