CFinderADM001783's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of alternative mRNA splicing, via spliceosome | 8.66E-06 | GO:0000381 |
| mRNA 3'-splice site recognition | 8.66E-06 | GO:0000389 |
| zinc II ion transmembrane transport | 0.00010593 | GO:0071577 |
| U2-type prespliceosome | 0.000160753 | GO:0071004 |
| zinc ion transmembrane transporter activity | 0.000180153 | GO:0005385 |
| U2 snRNP | 0.000223346 | GO:0005686 |
| catalytic step 2 spliceosome | 0.000512629 | GO:0071013 |
| Golgi membrane | 0.001506964 | GO:0000139 |
| Spliceosome | 0.003260414 | KEGG pathway |
| trans-Golgi network | 0.003326311 | GO:0005802 |
| RNA binding | 0.009429251 | GO:0003723 |
| integral component of membrane | 0.024834217 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001274 | AT5G13890 (3.00E-44) | Family of unknown function (DUF716) |
| CRO_T004577 | AT3G08650 (2.00E-154) | ZIP metal ion transporter family |
| CRO_T007987 | AT1G16210 (6.00E-62) | unknown protein |
| CRO_T019987 | AT1G14650 (2.00E-41) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein |
| CRO_T021247 | AT1G28280 (2.00E-37) | VQ motif-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001887 | Spliceosome phagocytosis regulation of alternative mRNA splicing, via spliceosome mRNA 3'-splice site recognition double-strand break repair via break-induced replication positive regulation of cyclin-dependent protein serine/threonine kinase activity positive regulation of phosphorylation of RNA polymerase II C-terminal domain cyclin-dependent protein serine/threonine kinase regulator activity MicroRNAs in cancer Transcriptional misregulation in cancers DNA replication initiation positive regulation of transcription from RNA polymerase II promoter regulation of cell shape U2-type prespliceosome cyclin-dependent protein kinase holoenzyme complex Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family U2 snRNP Cell cycle catalytic step 2 spliceosome peptidyl-serine phosphorylation formation of glycosidic bonds, GlycosylTransferases: GTnc nucleus RNA binding protein serine/threonine kinase activity | details |
| CFinderADM001896 | transcription factor TFIIE complex Protein_kinases_phosphatases, PPC:1.13.2: Leucine Rich Repeat Kinase IV Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III anaphase-promoting complex binding ubiquitin-protein transferase activator activity volatile benzenoid biosynthesis I (ester formation) transcription initiation from RNA polymerase II promoter protein phosphorylation Basal transcription factors regulation of catalytic activity cell division translational initiation Ubiquitin mediated proteolysis translation initiation factor activity Ubiquitin_Proteasome_system, E3 adaptor: DWD adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 ATP binding protein kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |