CFinderADM001887's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Spliceosome | 6.56E-06 | KEGG pathway |
| phagocytosis | 2.49E-05 | GO:0006909 |
| regulation of alternative mRNA splicing, via spliceosome | 3.11E-05 | GO:0000381 |
| mRNA 3'-splice site recognition | 3.11E-05 | GO:0000389 |
| double-strand break repair via break-induced replication | 3.11E-05 | GO:0000727 |
| positive regulation of cyclin-dependent protein serine/threonine kinase activity | 3.87E-05 | GO:0045737 |
| positive regulation of phosphorylation of RNA polymerase II C-terminal domain | 3.87E-05 | GO:1901409 |
| cyclin-dependent protein serine/threonine kinase regulator activity | 9.01E-05 | GO:0016538 |
| MicroRNAs in cancer | 1.00E-04 | KEGG pathway |
| Transcriptional misregulation in cancers | 1.00E-04 | KEGG pathway |
| DNA replication initiation | 0.000124091 | GO:0006270 |
| positive regulation of transcription from RNA polymerase II promoter | 0.000140581 | GO:0045944 |
| regulation of cell shape | 0.000157058 | GO:0008360 |
| U2-type prespliceosome | 0.000171156 | GO:0071004 |
| cyclin-dependent protein kinase holoenzyme complex | 0.000171156 | GO:0000307 |
| Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family | 0.000310705 | kinase family |
| U2 snRNP | 0.00031698 | GO:0005686 |
| Cell cycle | 0.00050984 | KEGG pathway |
| catalytic step 2 spliceosome | 0.000817998 | GO:0071013 |
| peptidyl-serine phosphorylation | 0.001174763 | GO:0018105 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.00131373 | cazy family |
| nucleus | 0.004281871 | GO:0005634 |
| RNA binding | 0.030463651 | GO:0003723 |
| protein serine/threonine kinase activity | 0.047798203 | GO:0004674 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005591 | AT1G58030 (4.00E-67) | CAT2|cationic amino acid transporter 2 |
| CRO_T007222 | AT4G19600 (3.00E-41) | CYCT1|Cyclin family protein |
| CRO_T010939 | AT2G04280 (0) | unknown protein |
| CRO_T019987 | AT1G14650 (2.00E-41) | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein |
| CRO_T025769 | AT1G09140 (3.00E-19) | At-SR30|Serine/Arginine-Rich Protein Splicing Factor 30; ATSRP30|SERINE-ARGININE PROTEIN 30 |
| CRO_T030183 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000670 | prefoldin complex MicroRNAs in cancer small GTPase mediated signal transduction unfolded protein binding protein folding Endocytosis Protein processing in endoplasmic reticulum GTP binding integral component of membrane Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001783 | regulation of alternative mRNA splicing, via spliceosome mRNA 3'-splice site recognition zinc II ion transmembrane transport U2-type prespliceosome zinc ion transmembrane transporter activity U2 snRNP catalytic step 2 spliceosome Golgi membrane Spliceosome trans-Golgi network RNA binding integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |