CFinderADM001797's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| xylan biosynthesis | 6.86E-05 | plantCyc |
| cellulose biosynthesis | 9.01E-05 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000123895 | cazy family |
| DNA recombination | 0.00021207 | GO:0006310 |
| ATP-dependent helicase activity | 0.000350458 | GO:0008026 |
| dioxygenase activity | 0.006439275 | GO:0051213 |
| transferase activity | 0.024556285 | GO:0016740 |
| nucleic acid binding | 0.031984805 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000605 | AT1G08760 (7.00E-27) | Plant protein of unknown function (DUF936) |
| CRO_T004612 | AT1G55850 (7.00E-105) | CSLE1|cellulose synthase like E1 |
| CRO_T028510 | AT1G24350 (3.00E-49) | Acid phosphatase/vanadium-dependent haloperoxidase-related protein |
| CRO_T029551 | AT4G32980 (5.00E-17) | ATH1|homeobox gene 1 |
| CRO_T030491 | AT4G25310 (2.00E-27) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001376 | UDP-glucuronate biosynthetic process glycosaminoglycan biosynthetic process UDP-glucose 6-dehydrogenase activity UDP-α-D-glucuronate biosynthesis (from UDP-glucose) UDP-D-xylose biosynthesis UDP-sugars interconversion vindoline and vinblastine biosynthesis Endocytosis Pentose and glucuronate interconversions small GTPase mediated signal transduction oxidation-reduction process NAD binding dioxygenase activity GTP binding endosome carbohydrate metabolic process | details |
| CFinderADM001864 | Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI ATP-dependent helicase activity DNA recombination ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 nucleic acid binding protein phosphorylation protein serine/threonine kinase activity | details |
| CFinderADM001940 | cilium Transcription_related, Transcription factor: TUB nucleic acid binding DNA-(apurinic or apyrimidinic site) lyase activity protein localization to cilium hydrolase activity, hydrolyzing N-glycosyl compounds Base excision repair ATP-dependent helicase activity phosphatidylinositol binding DNA recombination DNA repair Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |