CFinderADM001829's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| farnesyl diphosphate metabolic process | 5.65E-06 | GO:0045338 |
| prenylcysteine catabolic process | 5.65E-06 | GO:0030328 |
| prenylated protein catabolic process | 5.65E-06 | GO:0030327 |
| prenylcysteine oxidase activity | 6.91E-06 | GO:0001735 |
| farnesylcysteine salvage pathway | 1.55E-05 | plantCyc |
| regulation of membrane potential | 0.000148156 | GO:0042391 |
| voltage-gated potassium channel activity | 0.000156177 | GO:0005249 |
| potassium ion transmembrane transport | 0.000526139 | GO:0071805 |
| protein polyubiquitination | 0.000526139 | GO:0000209 |
| lyase activity | 0.00082368 | GO:0016829 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000894428 | GO:0042787 |
| abscisic acid-activated signaling pathway | 0.000894428 | GO:0009738 |
| Terpenoid backbone biosynthesis | 0.000895358 | KEGG pathway |
| Plant-pathogen interaction | 0.000946997 | KEGG pathway |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.001029619 | GO:0043161 |
| ubiquitin protein ligase activity | 0.00194167 | GO:0061630 |
| vacuolar membrane | 0.009576943 | GO:0005774 |
| integral component of plasma membrane | 0.009576943 | GO:0005887 |
| zinc ion binding | 0.049568459 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012285 | AT4G30560 (3.00E-141) | ATCNGC9|cyclic nucleotide gated channel 9 |
| CRO_T013709 | AT2G20650 (7.00E-16) | FLY2|FLYING SAUCER 2 |
| CRO_T022324 | AT5G63910 (6.00E-151) | FCLY|farnesylcysteine lyase |
| CRO_T024207 | AT1G15240 (2.00E-51) | Phox-associated domain; Phox-like; Sorting nexin, C-terminal |
| CRO_T029103 | AT5G65290 (6.00E-79) | LMBR1-like membrane protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001587 | Transcription_related, Transcription regulator: MED6 RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly RNA polymerase II transcriptional preinitiation complex assembly Ubiquitin_Proteasome_system, E3 adaptor: Cullin core mediator complex cullin-RING ubiquitin ligase complex mediator complex ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process regulation of transcription from RNA polymerase II promoter ubiquitin protein ligase activity Protein processing in endoplasmic reticulum | details |
| CFinderADM001616 | regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process GABAergic synapse Transcription_related, Transcription factor: G2-like regulation of membrane potential N,N-dimethylaniline monooxygenase activity voltage-gated potassium channel activity potassium ion transmembrane transport regulation of catalytic activity amino acid transmembrane transporter activity amino acid transmembrane transport NADP binding Plant-pathogen interaction chloroplast thylakoid flavin adenine dinucleotide binding magnesium ion binding integral component of plasma membrane transcription, DNA-templated regulation of transcription, DNA-templated | details |
| CFinderADM001828 | Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Plant-pathogen interaction Protein processing in endoplasmic reticulum integral component of plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |