CFinderADM001587's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: MED6 | 5.76E-06 | TF family |
| RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly | 1.02E-05 | GO:0001128 |
| RNA polymerase II transcriptional preinitiation complex assembly | 1.69E-05 | GO:0051123 |
| Ubiquitin_Proteasome_system, E3 adaptor: Cullin | 5.03E-05 | ubs family |
| core mediator complex | 0.000111192 | GO:0070847 |
| cullin-RING ubiquitin ligase complex | 0.000111192 | GO:0031461 |
| mediator complex | 0.000454475 | GO:0016592 |
| ubiquitin protein ligase binding | 0.000591375 | GO:0031625 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000685371 | GO:0042787 |
| regulation of transcription from RNA polymerase II promoter | 0.000685371 | GO:0006357 |
| ubiquitin protein ligase activity | 0.001954787 | GO:0061630 |
| Protein processing in endoplasmic reticulum | 0.007838449 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009803 | AT1G02980 (0) | CUL2|cullin 2 |
| CRO_T012431 | AT4G29870 (1.00E-51) | Oligosaccharyltransferase complex/magnesium transporter family protein |
| CRO_T022589 | AT3G21350 (4.00E-65) | MED6|RNA polymerase transcriptional regulation mediator-related |
| CRO_T024207 | AT1G15240 (2.00E-51) | Phox-associated domain; Phox-like; Sorting nexin, C-terminal |
| CRO_T027712 | - | - |
| CRO_T029279 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000666 | RNA degradation heterocyclic compound binding organic cyclic compound binding | details |
| CFinderADM000761 | auxin efflux transmembrane transporter activity auxin homeostasis auxin efflux protein polyubiquitination auxin polar transport auxin-activated signaling pathway pollen development protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process integral component of membrane ubiquitin protein ligase activity endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING transmembrane transport | details |
| CFinderADM000924 | rosmarinic acid biosynthesis II rosmarinic acid biosynthesis I positive regulation of biological process oxidative photosynthetic carbon pathway hydroxyphenylpyruvate reductase activity lipid transporter activity hydroxypyruvate reductase activity glyoxylate reductase (NADP) activity response to far red light red or far-red light signaling pathway 4-hydroxybenzoate biosynthesis I (eukaryotes) formation of glycosidic bonds, GlycosylTransferases: GTnc cysteine-type peptidase activity lipid transport Ubiquitin_Proteasome_system, DUB: ULP poly(A) RNA binding Lysosome ATP-dependent RNA helicase activity NAD binding RNA processing Transcription_related, Transcription factor: FAR1 Spliceosome Carbon metabolism | details |
| CFinderADM001003 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glucosylceramidase activity glucosylceramide catabolic process Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Sphingolipid metabolism Wnt signaling pathway regulation of cell shape Endocytosis peptidyl-serine phosphorylation oxidoreductase activity protein serine/threonine kinase activity | details |
| CFinderADM001225 | D-erythro-sphingosine kinase activity ceramide degradation sphingolipid biosynthetic process sphingolipid biosynthesis (plants) ubiquitin conjugating enzyme binding positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin ligase complex protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity phosphorylation zinc ion binding | details |
| CFinderADM001357 | lipid transporter activity lipid transport poly(A) RNA binding Lysosome RNA processing integral component of membrane ATP-dependent RNA helicase activity Spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001429 | protein kinase CK2 complex transcription factor TFIID complex peroxisomal membrane regulation of ethylene-activated signaling pathway peroxisome organization organelle organization protein kinase regulator activity cytokinin-activated signaling pathway regulation of protein kinase activity response to starvation DNA-templated transcription, initiation autophagy Ubiquitin_Proteasome_system, E2: UBC jasmonic acid mediated signaling pathway Autophagy - animal Basal transcription factors Peroxisome SNARE interactions in vesicular transport single-organism cellular process translational initiation Ribosome biogenesis in eukaryotes protein heterodimerization activity translation initiation factor activity cytoplasmic part kinase activity phosphorylation | details |
| CFinderADM001451 | phosphopantetheine binding poly(A) RNA binding fatty acid biosynthetic process RNA processing ATP-dependent RNA helicase activity Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001588 | protein targeting glucose catabolic process Transcriptional misregulation in cancers nucleosome protein heterodimerization activity Protein processing in endoplasmic reticulum endoplasmic reticulum membrane DNA binding | details |
| CFinderADM001828 | Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Plant-pathogen interaction Protein processing in endoplasmic reticulum integral component of plasma membrane | details |
| CFinderADM001829 | farnesyl diphosphate metabolic process prenylcysteine catabolic process prenylated protein catabolic process prenylcysteine oxidase activity farnesylcysteine salvage pathway regulation of membrane potential voltage-gated potassium channel activity potassium ion transmembrane transport protein polyubiquitination lyase activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process abscisic acid-activated signaling pathway Terpenoid backbone biosynthesis Plant-pathogen interaction proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity vacuolar membrane integral component of plasma membrane zinc ion binding | details |
| CFinderADM001899 | nucleotide phosphatase activity, acting on free nucleotides RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly Transcription_related, Transcription regulator: MED6 RNA polymerase II transcriptional preinitiation complex assembly core mediator complex pyrimidine deoxyribonucleotides de novo biosynthesis I mediator complex pyrimidine ribonucleotides interconversion Transcription_related, Transcription factor: B3 regulation of transcription from RNA polymerase II promoter dephosphorylation Purine metabolism | details |
| CFinderADM001932 | alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity nucleotide phosphatase activity, acting on free nucleotides polyubiquitin binding response to cadmium ion pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion protein glycosylation N-Glycan biosynthesis S-adenosylmethionine-dependent methyltransferase activity dephosphorylation Purine metabolism endosome vacuolar membrane trans-Golgi network methylation | details |
| CFinderADM002157 | cell tip growth Ubiquitin_Proteasome_system, E3 adaptor: Cullin cullin-RING ubiquitin ligase complex potassium ion transmembrane transporter activity potassium ion transmembrane transport ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity vacuolar membrane Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |