CFinderADM001834's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| inositol hexakisphosphate binding | 4.29E-05 | GO:0000822 |
| Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII | 6.09E-05 | kinase family |
| Phagosome | 0.000131878 | KEGG pathway |
| microtubule-based process | 0.000354496 | GO:0007017 |
| structural constituent of cytoskeleton | 0.000365767 | GO:0005200 |
| auxin-activated signaling pathway | 0.00075887 | GO:0009734 |
| Transcription_related, Transcription factor: C3H | 0.00111238 | TF family |
| microtubule | 0.001680853 | GO:0005874 |
| Plant-pathogen interaction | 0.002442558 | KEGG pathway |
| GTPase activity | 0.006602088 | GO:0003924 |
| Plant hormone signal transduction | 0.007312041 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.009090368 | ubs family |
| GTP binding | 0.012490321 | GO:0005525 |
| protein phosphorylation | 0.039059761 | GO:0006468 |
| protein serine/threonine kinase activity | 0.046778836 | GO:0004674 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005742 | AT3G62220 (3.00E-134) | Protein kinase superfamily protein |
| CRO_T007415 | AT1G19860 (3.00E-76) | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| CRO_T010853 | AT1G12820 (0) | AFB3|auxin signaling F-box 3 |
| CRO_T013741 | AT5G59380 (9.00E-06) | MBD6|methyl-CPG-binding domain 6 |
| CRO_T022825 | AT4G00850 (2.00E-21) | GIF3|GRF1-interacting factor 3 |
| CRO_T028617 | AT5G05620 (5.00E-35) | ATGCP2|GAMMA-TUBULIN COMPLEX PROTEIN 2; TUBG2|GAMMA-TUBULIN 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001180 | pyrimidine deoxyribonucleotides de novo biosynthesis I dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process branched-chain amino acid catabolic process isovaleryl-CoA dehydrogenase activity thymidylate kinase activity oxidoreductase activity, acting on a sulfur group of donors argininosuccinate metabolic process argininosuccinate synthase activity inositol hexakisphosphate binding tRNA methyltransferase activity Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family leucine catabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) uridylate kinase activity pyrimidine deoxyribonucleotides de novo biosynthesis II rRNA methyltransferase activity L-arginine biosynthesis II (acetyl cycle) L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) rRNA base methylation lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor plant-type hypersensitive response fatty-acyl-CoA binding glucan endo-1,3-beta-D-glucosidase activity Valine, leucine and isoleucine degradation zinc ion binding transcription coactivator activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX L-valine degradation I tRNA methylation arginine biosynthetic process iron-sulfur cluster binding transcription from RNA polymerase II promoter pyrimidine ribonucleotides interconversion vindoline and vinblastine biosynthesis positive regulation of transcription, DNA-templated auxin-activated signaling pathway metalloendopeptidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3: RING single-organism metabolic process protein serine/threonine phosphatase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Pyrimidine metabolism cell mitochondrial matrix Transcription_related, Transcription factor: bHLH protein dephosphorylation | details |
| CFinderADM001266 | dTDP biosynthetic process dUDP biosynthetic process dTTP biosynthetic process thymidylate kinase activity oxidoreductase activity, acting on a sulfur group of donors Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII uridylate kinase activity anthocyanin biosynthesis anthocyanin biosynthesis (pelargonidin 3-O-glucoside) proanthocyanidins biosynthesis from flavanols pyrimidine deoxyribonucleotides de novo biosynthesis II pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) pinobanksin biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I ethylene biosynthesis I (plants) leucodelphinidin biosynthesis Pyrimidine metabolism Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) Plant-pathogen interaction protein catabolic process cell benzoate biosynthesis I (CoA-dependent, β-oxidative) aspartic-type endopeptidase activity single-organism metabolic process lipid metabolic process cellular process dioxygenase activity proteolysis | details |
| CFinderADM001400 | Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase inositol hexakisphosphate binding triacylglycerol degradation auxin-activated signaling pathway lipid metabolic process Plant hormone signal transduction 2-alkenal reductase [NAD(P)] activity Ubiquitin_Proteasome_system, E3 adaptor: F-box protein kinase activity RNA binding integral component of membrane | details |
| CFinderADM001835 | Transcription_related, Transcription factor: PLATZ intracellular protein transport intracellular integral component of membrane | details |
| CFinderADM001839 | regulation of G2/M transition of mitotic cell cycle histone monoubiquitination histone H2B ubiquitination seed dormancy process Ubiquitin_Proteasome_system, E3: RING defense response to fungus, incompatible interaction cytokinesis by cell plate formation cell plate cell growth leaf morphogenesis vegetative to reproductive phase transition of meristem protein peptidyl-prolyl isomerization cell division Endocytosis small GTPase mediated signal transduction protein folding peptidyl-prolyl cis-trans isomerase activity protein homodimerization activity ligase activity ubiquitin-protein transferase activity endosome GTP binding plasmodesma hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |