CFinderADM001400's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase | 9.60E-06 | kinase family |
| inositol hexakisphosphate binding | 3.37E-05 | GO:0000822 |
| triacylglycerol degradation | 0.000920843 | plantCyc |
| auxin-activated signaling pathway | 0.002244898 | GO:0009734 |
| lipid metabolic process | 0.003707146 | GO:0006629 |
| Plant hormone signal transduction | 0.00447676 | KEGG pathway |
| 2-alkenal reductase [NAD(P)] activity | 0.004866786 | GO:0032440 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.006871026 | ubs family |
| protein kinase activity | 0.023098041 | GO:0004672 |
| RNA binding | 0.024622449 | GO:0003723 |
| integral component of membrane | 0.037232033 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006734 | AT1G78530 (3.00E-48) | Protein kinase superfamily protein |
| CRO_T009346 | AT1G18460 (0) | alpha/beta-Hydrolases superfamily protein |
| CRO_T010853 | AT1G12820 (0) | AFB3|auxin signaling F-box 3 |
| CRO_T011847 | AT1G20670 (2.00E-95) | DNA-binding bromodomain-containing protein |
| CRO_T014043 | AT2G24420 (1.00E-11) | DNA repair ATPase-related |
| CRO_T028468 | AT5G61020 (2.00E-100) | ECT3|evolutionarily conserved C-terminal region 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001180 | pyrimidine deoxyribonucleotides de novo biosynthesis I dUDP biosynthetic process dTTP biosynthetic process dTDP biosynthetic process branched-chain amino acid catabolic process isovaleryl-CoA dehydrogenase activity thymidylate kinase activity oxidoreductase activity, acting on a sulfur group of donors argininosuccinate metabolic process argininosuccinate synthase activity inositol hexakisphosphate binding tRNA methyltransferase activity Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family leucine catabolic process urea cycle L-arginine biosynthesis I (via L-ornithine) uridylate kinase activity pyrimidine deoxyribonucleotides de novo biosynthesis II rRNA methyltransferase activity L-arginine biosynthesis II (acetyl cycle) L-leucine degradation I pyrimidine deoxyribonucleotide phosphorylation superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) rRNA base methylation lipid homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor plant-type hypersensitive response fatty-acyl-CoA binding glucan endo-1,3-beta-D-glucosidase activity Valine, leucine and isoleucine degradation zinc ion binding transcription coactivator activity Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX L-valine degradation I tRNA methylation arginine biosynthetic process iron-sulfur cluster binding transcription from RNA polymerase II promoter pyrimidine ribonucleotides interconversion vindoline and vinblastine biosynthesis positive regulation of transcription, DNA-templated auxin-activated signaling pathway metalloendopeptidase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3: RING single-organism metabolic process protein serine/threonine phosphatase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Pyrimidine metabolism cell mitochondrial matrix Transcription_related, Transcription factor: bHLH protein dephosphorylation | details |
| CFinderADM001834 | inositol hexakisphosphate binding Protein_kinases_phosphatases, PPC:1.2.1: Receptor Like Cytoplasmic Kinase VIII Phagosome microtubule-based process structural constituent of cytoskeleton auxin-activated signaling pathway Transcription_related, Transcription factor: C3H microtubule Plant-pathogen interaction GTPase activity Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box GTP binding protein phosphorylation protein serine/threonine kinase activity | details |
| CFinderADM002274 | Protein_kinases_phosphatases, PPC:1.9.3: Putative receptor like protein kinase COPII vesicle coat viral nucleocapsid intracellular ribonucleoprotein complex RNA processing ER to Golgi vesicle-mediated transport intracellular protein transport Protein processing in endoplasmic reticulum 2-alkenal reductase [NAD(P)] activity protein kinase activity RNA binding protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |