CFinderADM001842's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| carbamoyl-phosphate synthase complex | 6.91E-06 | GO:0005951 |
| positive regulation of translational termination | 1.28E-05 | GO:0045905 |
| translational frameshifting | 1.28E-05 | GO:0006452 |
| positive regulation of translational elongation | 1.28E-05 | GO:0045901 |
| urea cycle | 3.35E-05 | plantCyc |
| L-arginine biosynthesis I (via L-ornithine) | 3.51E-05 | plantCyc |
| UMP biosynthesis I | 3.51E-05 | plantCyc |
| ornithine-citrulline shuttle | 5.70E-05 | plantCyc |
| L-arginine biosynthesis II (acetyl cycle) | 6.13E-05 | plantCyc |
| carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 6.14E-05 | GO:0004088 |
| L-glutamine degradation I | 7.44E-05 | plantCyc |
| 'de novo' pyrimidine nucleobase biosynthetic process | 8.41E-05 | GO:0006207 |
| arginine biosynthetic process | 0.000155489 | GO:0006526 |
| glutamine metabolic process | 0.000155489 | GO:0006541 |
| vesicle docking | 0.000183704 | GO:0048278 |
| Pyrimidine metabolism | 0.000241265 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.000241265 | KEGG pathway |
| vesicle fusion | 0.000372593 | GO:0006906 |
| translation elongation factor activity | 0.000453875 | GO:0003746 |
| SNAP receptor activity | 0.000453875 | GO:0005484 |
| ribosome binding | 0.000453875 | GO:0043022 |
| SNARE binding | 0.000453875 | GO:0000149 |
| translational initiation | 0.000839625 | GO:0006413 |
| SNARE complex | 0.000892479 | GO:0031201 |
| translation initiation factor activity | 0.001484846 | GO:0003743 |
| endomembrane system | 0.001580388 | GO:0012505 |
| intracellular protein transport | 0.003037925 | GO:0006886 |
| chloroplast stroma | 0.015566251 | GO:0009570 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002014 | AT1G55340 (2.00E-19) | Protein of unknown function (DUF1639) |
| CRO_T002414 | AT1G32270 (8.00E-06) | SYP24|SYNTAXIN 24 |
| CRO_T011311 | AT1G53380 (4.00E-141) | Plant protein of unknown function (DUF641) |
| CRO_T015106 | AT1G24909 (7.00E-11) | Glutamine amidotransferase type 1 family protein |
| CRO_T019982 | AT1G13950 (1.00E-78) | ATELF5A-1|EUKARYOTIC ELONGATION FACTOR 5A-1; EIF5A|EUKARYOTIC ELONGATION FACTOR 5A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000362 | cellular transition metal ion homeostasis metal ion transport transition metal ion binding MAPK signaling pathway - plant Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Ubiquitin_Proteasome_system, E3: U-box protein ubiquitination ubiquitin-protein transferase activity kinase activity | details |
| CFinderADM000691 | oxidoreductase activity deadenylation-independent decapping of nuclear-transcribed mRNA deadenylation-dependent decapping of nuclear-transcribed mRNA enzyme activator activity transmembrane receptor protein kinase activity positive regulation of catalytic activity Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase cytoplasmic mRNA processing body mRNA binding FMN binding ribosome biogenesis mRNA splicing, via spliceosome signal transduction GTPase activity Ribosome biogenesis in eukaryotes RNA degradation nucleolus | details |
| CFinderADM000877 | Golgi apparatus Thyroid hormone signaling pathway positive regulation of translational elongation positive regulation of translational termination translational frameshifting xylan biosynthetic process glucuronosyltransferase activity plant-type secondary cell wall biogenesis mediator complex formation of glycosidic bonds, GlycosylTransferases: GTnc ribosome binding O-acetyltransferase activity translation elongation factor activity cell wall organization or biogenesis translational initiation translation initiation factor activity kinase activity phosphorylation Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001061 | Transcription_related, Transcription factor: C2H2 translational frameshifting positive regulation of translational elongation positive regulation of translational termination Transcription_related, Transcription factor: C2C2-GATA translation elongation factor activity ribosome binding translational initiation Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII 2-alkenal reductase [NAD(P)] activity translation initiation factor activity | details |
| CFinderADM001494 | positive regulation of translational termination positive regulation of translational elongation translational frameshifting ribosome binding translation elongation factor activity Transcription_related, Transcription factor: C2C2-GATA translational initiation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc translation initiation factor activity Transcription_related, Transcription factor: C2H2 | details |
| CFinderADM001719 | carbamoyl-phosphate synthase complex positive regulation of translational termination translational frameshifting positive regulation of translational elongation Thyroid hormone signaling pathway urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I ornithine-citrulline shuttle L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity 'de novo' pyrimidine nucleobase biosynthetic process arginine biosynthetic process glutamine metabolic process Pyrimidine metabolism mediator complex ribosome binding translation elongation factor activity translational initiation proteasome-mediated ubiquitin-dependent protein catabolic process translation initiation factor activity ubiquitin protein ligase activity protein ubiquitination kinase activity Ubiquitin_Proteasome_system, E3: RING phosphorylation chloroplast stroma | details |
| CFinderADM001770 | carbamoyl-phosphate synthase complex nucleobase-containing compound transmembrane transporter activity carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle tRNA re-export from nucleus nuclear matrix meristem initiation Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family ornithine-citrulline shuttle L-arginine biosynthesis II (acetyl cycle) L-glutamine degradation I pyrimidine deoxyribonucleotides de novo biosynthesis I tRNA binding NOD-like receptor signaling pathway 'de novo' pyrimidine nucleobase biosynthetic process arginine biosynthetic process glycerol ether metabolic process glutamine metabolic process Ran GTPase binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor sulfate assimilation flower development cellular response to oxidative stress Pyrimidine metabolism cytosol nuclear pore pyrimidine ribonucleotides interconversion protein disulfide oxidoreductase activity cell redox homeostasis protein folding Purine metabolism protein kinase activity phosphorylation chloroplast stroma nucleotide binding | details |
| CFinderADM001849 | Protein_kinases_phosphatases, PPC:1.13.1: Leucine Rich Repeat Kinase VII positive regulation of translational elongation translational frameshifting positive regulation of translational termination oxidoreductase activity cellular metabolic process ribosome binding translation elongation factor activity single-organism metabolic process translational initiation Phenylpropanoid biosynthesis translation initiation factor activity kinase activity phosphorylation binding | details |
Expression profiles
 Show details about module gene expression profiling |