CFinderADM001895's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| TAT protein transport complex | 1.87E-05 | GO:0033281 |
| soluble NSF attachment protein activity | 2.57E-05 | GO:0005483 |
| syntaxin binding | 3.22E-05 | GO:0019905 |
| protein secretion | 4.50E-05 | GO:0009306 |
| membrane fusion | 4.50E-05 | GO:0061025 |
| iron-sulfur cluster assembly | 0.000249488 | GO:0016226 |
| iron-sulfur cluster binding | 0.000393186 | GO:0051536 |
| Protein export | 0.000402909 | KEGG pathway |
| protein transporter activity | 0.001408959 | GO:0008565 |
| SNARE complex | 0.002413481 | GO:0031201 |
| transferase activity, transferring glycosyl groups | 0.003301288 | GO:0016757 |
| intracellular protein transport | 0.004156539 | GO:0006886 |
| vacuolar membrane | 0.00965029 | GO:0005774 |
| chloroplast thylakoid membrane | 0.014778504 | GO:0009535 |
| chloroplast envelope | 0.014778504 | GO:0009941 |
| iron ion binding | 0.016848333 | GO:0005506 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000980 | AT3G12570 (2.00E-172) | FYD|FYD |
| CRO_T002104 | AT1G32230 (2.00E-14) | ATP8|P8 (INTERACTING PROTEIN); RCD1|RADICAL-INDUCED CELL DEATH1 |
| CRO_T009063 | AT2G43240 (6.00E-117) | Nucleotide-sugar transporter family protein |
| CRO_T012240 | - | - |
| CRO_T021017 | AT5G28750 (2.00E-18) | Bacterial sec-independent translocation protein mttA/Hcf106 |
| CRO_T031987 | AT4G01940 (2.00E-54) | NFU1|NFU domain protein 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001042 | mRNA surveillance pathway 2-oxoglutarate decarboxylation to succinyl-CoA Golgi to plasma membrane protein transport galactolipid biosynthetic process Golgi vesicle docking mRNA transport long-day photoperiodism, flowering RNA splicing, via endonucleolytic cleavage and ligation hydrogen peroxide biosynthetic process primary miRNA processing mRNA cis splicing, via spliceosome nuclear cap binding complex oxoglutarate dehydrogenase (succinyl-transferring) activity RNA cap binding cullin deneddylation Golgi stack calcium-dependent cysteine-type endopeptidase activity COP9 signalosome protein complex membrane coat mitochondrial outer membrane proteolysis thiamine pyrophosphate binding intra-Golgi vesicle-mediated transport structural molecule activity Autophagy - yeast tricarboxylic acid cycle nucleotide binding response to abscisic acid vesicle-mediated transport ATPase activity intracellular protein transport serine-type endopeptidase activity Ribosome Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001368 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase soluble NSF attachment protein activity syntaxin binding membrane fusion SNARE complex Spliceosome vacuolar membrane intracellular protein transport Ubiquitin_Proteasome_system, E3: RING protein phosphorylation protein serine/threonine kinase activity cytoplasm | details |
| CFinderADM001369 | soluble NSF attachment protein activity syntaxin binding membrane fusion ribosome biogenesis Ubiquitin_Proteasome_system, DUB: OTU zinc ion binding Ribosome biogenesis in eukaryotes SNARE complex GTPase activity intracellular protein transport nucleolus vacuolar membrane GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001445 | sterol 24-C-methyltransferase activity interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication mitotic spindle assembly meiotic nuclear division microtubule minus-end binding gamma-tubulin binding gamma-tubulin small complex sterol biosynthetic process equatorial microtubule organizing center cytoplasmic microtubule organization plant sterol biosynthesis structural constituent of cytoskeleton Steroid biosynthesis iron-sulfur cluster binding iron-sulfur cluster assembly chloroplast embryo development ending in seed dormancy microtubule endosome vacuolar membrane trans-Golgi network methylation endoplasmic reticulum iron ion binding plasmodesma | details |
| CFinderADM001446 | interphase microtubule nucleation by interphase microtubule organizing center centrosome duplication mitotic spindle assembly Ubiquitin_Proteasome_system, E3 adaptor: Cullin gamma-tubulin small complex meiotic nuclear division equatorial microtubule organizing center anaphase-promoting complex gamma-tubulin binding microtubule minus-end binding phosphogluconate dehydrogenase (decarboxylating) activity spindle cytoplasmic microtubule organization megagametogenesis chloroplast structural constituent of cytoskeleton iron-sulfur cluster assembly iron-sulfur cluster binding ubiquitin protein ligase binding protein ubiquitination involved in ubiquitin-dependent protein catabolic process Ubiquitin mediated proteolysis microtubule NAD binding ubiquitin protein ligase activity iron ion binding | details |
| CFinderADM001636 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity negative regulation of reductive pentose-phosphate cycle phosphatidylethanolamine biosynthesis I tubulin complex assembly Ran GTPase binding RNA splicing protein complex gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt single-organism cellular process intracellular protein transport protein folding RNA transport Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD metabolic process | details |
| CFinderADM001637 | galactolipid biosynthetic process hydrogen peroxide biosynthetic process tubulin complex assembly regulation of leaf development mitochondrial outer membrane protein complex Transcription_related, Transcription factor: TCP iron-sulfur cluster binding iron-sulfur cluster assembly single-organism cellular process protein folding iron ion binding | details |
| CFinderADM001867 | actin filament polymerization BAT3 complex protein insertion into ER membrane TAT protein transport complex flavin-linked sulfhydryl oxidase activity soluble NSF attachment protein activity syntaxin binding protein secretion membrane fusion Arp2/3 complex-mediated actin nucleation integral component of Golgi membrane Arp2/3 protein complex protein disulfide isomerase activity actin binding extracellular space Protein export SNARE complex protein transporter activity Transcription_related, Transcription factor: ERF Endocytosis multicellular organism development cell redox homeostasis protein folding intracellular protein transport vacuolar membrane chloroplast envelope chloroplast thylakoid membrane transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
| CFinderADM001918 | intracellular protein transport Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase membrane fusion regulation of photomorphogenesis soluble NSF attachment protein activity syntaxin binding COPI vesicle coat Ubiquitin_Proteasome_system, E2: UBC ATP synthesis coupled electron transport mitochondrial respiratory chain complex I structural molecule activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation 2 iron, 2 sulfur cluster binding SNARE complex 4 iron, 4 sulfur cluster binding vesicle-mediated transport Golgi membrane response to oxidative stress NADH dehydrogenase (ubiquinone) activity Ubiquitin mediated proteolysis electron carrier activity ligase activity vacuolar membrane Oxidative phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |