CFinderADM001368's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase | 6.55E-06 | kinase family |
| soluble NSF attachment protein activity | 1.38E-05 | GO:0005483 |
| syntaxin binding | 1.73E-05 | GO:0019905 |
| membrane fusion | 3.23E-05 | GO:0061025 |
| SNARE complex | 0.000895841 | GO:0031201 |
| Spliceosome | 0.003260414 | KEGG pathway |
| vacuolar membrane | 0.003592314 | GO:0005774 |
| intracellular protein transport | 0.003849885 | GO:0006886 |
| Ubiquitin_Proteasome_system, E3: RING | 0.010858848 | ubs family |
| protein phosphorylation | 0.033955982 | GO:0006468 |
| protein serine/threonine kinase activity | 0.0356876 | GO:0004674 |
| cytoplasm | 0.049415538 | GO:0005737 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000980 | AT3G12570 (2.00E-172) | FYD|FYD |
| CRO_T004395 | - | - |
| CRO_T009063 | AT2G43240 (6.00E-117) | Nucleotide-sugar transporter family protein |
| CRO_T023605 | - | - |
| CRO_T028792 | AT5G08160 (3.00E-56) | ATPK3|serine/threonine protein kinase 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000462 | negative regulation of photomorphogenesis short-day photoperiodism, flowering hormone-mediated signaling pathway cotyledon development actin filament depolymerization sugar mediated signaling pathway Cul4-RING E3 ubiquitin ligase complex actin cytoskeleton Ubiquitin_Proteasome_system, E3 adaptor: Cullin photomorphogenesis flower development Regulation of actin cytoskeleton ribosome biogenesis protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process ubiquitin protein ligase binding actin binding DNA repair Ribosome biogenesis in eukaryotes Ubiquitin mediated proteolysis ubiquitin protein ligase activity GTPase activity nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001042 | mRNA surveillance pathway 2-oxoglutarate decarboxylation to succinyl-CoA Golgi to plasma membrane protein transport galactolipid biosynthetic process Golgi vesicle docking mRNA transport long-day photoperiodism, flowering RNA splicing, via endonucleolytic cleavage and ligation hydrogen peroxide biosynthetic process primary miRNA processing mRNA cis splicing, via spliceosome nuclear cap binding complex oxoglutarate dehydrogenase (succinyl-transferring) activity RNA cap binding cullin deneddylation Golgi stack calcium-dependent cysteine-type endopeptidase activity COP9 signalosome protein complex membrane coat mitochondrial outer membrane proteolysis thiamine pyrophosphate binding intra-Golgi vesicle-mediated transport structural molecule activity Autophagy - yeast tricarboxylic acid cycle nucleotide binding response to abscisic acid vesicle-mediated transport ATPase activity intracellular protein transport serine-type endopeptidase activity Ribosome Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001369 | soluble NSF attachment protein activity syntaxin binding membrane fusion ribosome biogenesis Ubiquitin_Proteasome_system, DUB: OTU zinc ion binding Ribosome biogenesis in eukaryotes SNARE complex GTPase activity intracellular protein transport nucleolus vacuolar membrane GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001636 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity negative regulation of reductive pentose-phosphate cycle phosphatidylethanolamine biosynthesis I tubulin complex assembly Ran GTPase binding RNA splicing protein complex gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt single-organism cellular process intracellular protein transport protein folding RNA transport Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD metabolic process | details |
| CFinderADM001637 | galactolipid biosynthetic process hydrogen peroxide biosynthetic process tubulin complex assembly regulation of leaf development mitochondrial outer membrane protein complex Transcription_related, Transcription factor: TCP iron-sulfur cluster binding iron-sulfur cluster assembly single-organism cellular process protein folding iron ion binding | details |
| CFinderADM001785 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase nuclear cap binding complex mRNA transport long-day photoperiodism, flowering RNA splicing, via endonucleolytic cleavage and ligation serine O-acetyltransferase activity RNA cap binding primary miRNA processing mRNA cis splicing, via spliceosome L-cysteine biosynthesis I seleno-amino acid biosynthesis membrane coat cysteine biosynthetic process from serine structural molecule activity cytoplasm response to abscisic acid vesicle-mediated transport intracellular protein transport Spliceosome Carbon metabolism protein serine/threonine kinase activity | details |
| CFinderADM001867 | actin filament polymerization BAT3 complex protein insertion into ER membrane TAT protein transport complex flavin-linked sulfhydryl oxidase activity soluble NSF attachment protein activity syntaxin binding protein secretion membrane fusion Arp2/3 complex-mediated actin nucleation integral component of Golgi membrane Arp2/3 protein complex protein disulfide isomerase activity actin binding extracellular space Protein export SNARE complex protein transporter activity Transcription_related, Transcription factor: ERF Endocytosis multicellular organism development cell redox homeostasis protein folding intracellular protein transport vacuolar membrane chloroplast envelope chloroplast thylakoid membrane transcription factor activity, sequence-specific DNA binding transcription, DNA-templated | details |
| CFinderADM001895 | TAT protein transport complex soluble NSF attachment protein activity syntaxin binding protein secretion membrane fusion iron-sulfur cluster assembly iron-sulfur cluster binding Protein export protein transporter activity SNARE complex transferase activity, transferring glycosyl groups intracellular protein transport vacuolar membrane chloroplast thylakoid membrane chloroplast envelope iron ion binding | details |
| CFinderADM001918 | intracellular protein transport Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase membrane fusion regulation of photomorphogenesis soluble NSF attachment protein activity syntaxin binding COPI vesicle coat Ubiquitin_Proteasome_system, E2: UBC ATP synthesis coupled electron transport mitochondrial respiratory chain complex I structural molecule activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation 2 iron, 2 sulfur cluster binding SNARE complex 4 iron, 4 sulfur cluster binding vesicle-mediated transport Golgi membrane response to oxidative stress NADH dehydrogenase (ubiquinone) activity Ubiquitin mediated proteolysis electron carrier activity ligase activity vacuolar membrane Oxidative phosphorylation | details |
| CFinderADM001919 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase oxoglutarate dehydrogenase (succinyl-transferring) activity 2-oxoglutarate decarboxylation to succinyl-CoA thiamine pyrophosphate binding mitochondrial respiratory chain complex I aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation ATP synthesis coupled electron transport tricarboxylic acid cycle 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding response to oxidative stress NADH dehydrogenase (ubiquinone) activity mRNA surveillance pathway electron carrier activity ligase activity Carbon metabolism Oxidative phosphorylation protein phosphorylation nucleic acid binding nucleotide binding protein serine/threonine kinase activity | details |
| CFinderADM002181 | organic acid transmembrane transporter activity organic acid transmembrane transport regulation of vesicle targeting, to, from or within Golgi Golgi medial cisterna cis-Golgi network ribosomal large subunit biogenesis intra-Golgi vesicle-mediated transport SNAP receptor activity SNARE binding vesicle fusion preribosome, large subunit precursor ER to Golgi vesicle-mediated transport SNARE interactions in vesicular transport protein transport SNARE complex Golgi membrane Spliceosome nucleolus Ubiquitin_Proteasome_system, E3 adaptor: DWD integral component of plasma membrane | details |
Expression profiles
 Show details about module gene expression profiling |