CFinderADM001907's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| fumarate hydratase activity | 5.13E-06 | GO:0004333 |
| tricarboxylic acid cycle enzyme complex | 6.91E-06 | GO:0045239 |
| fumarate metabolic process | 1.48E-05 | GO:0006106 |
| mitochondrial respiratory chain complex III | 2.42E-05 | GO:0005750 |
| protein tetramerization | 2.47E-05 | GO:0051262 |
| mitochondrial electron transport, ubiquinol to cytochrome c | 7.41E-05 | GO:0006122 |
| TCA cycle II (plants and fungi) | 0.000195788 | plantCyc |
| aerobic respiration | 0.000207063 | GO:0009060 |
| malate metabolic process | 0.000207063 | GO:0006108 |
| protein processing | 0.000246348 | GO:0016485 |
| aerobic respiration I (cytochrome c) | 0.000322033 | plantCyc |
| tricarboxylic acid cycle | 0.000348725 | GO:0006099 |
| Peroxisome | 0.000387701 | KEGG pathway |
| metalloendopeptidase activity | 0.000766633 | GO:0004222 |
| transport | 0.008164749 | GO:0006810 |
| Carbon metabolism | 0.011567188 | KEGG pathway |
| translation | 0.015135376 | GO:0006412 |
| structural constituent of ribosome | 0.023077185 | GO:0003735 |
| integral component of membrane | 0.035159698 | GO:0016021 |
| mitochondrion | 0.046662089 | GO:0005739 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001737 | AT1G57820 (1.00E-15) | ORTH2|ORTHRUS 2; VIM1|VARIANT IN METHYLATION 1 |
| CRO_T005134 | AT3G53940 (0.0000009) | Mitochondrial substrate carrier family protein |
| CRO_T014035 | AT3G02090 (0) | MPPBETA|Insulinase (Peptidase family M16) protein |
| CRO_T022142 | AT5G43140 (5.00E-18) | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein |
| CRO_T023635 | AT2G47510 (0) | FUM1|fumarase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000920 | negative regulation of chlorophyll biosynthetic process tetrapyrrole binding red or far-red light signaling pathway chloroplast-nucleus signaling pathway TCA cycle II (plants and fungi) MAPK signaling pathway integral component of endoplasmic reticulum membrane nuclear envelope Transcription_related, Transcription factor: RWP-RK cellular protein metabolic process Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII phosphoprotein phosphatase activity lyase activity protein dephosphorylation copper ion binding ligase activity ATP binding Carbon metabolism adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 plasmodesma metabolic process Ubiquitin_Proteasome_system, E3: RING protein serine/threonine kinase activity | details |
| CFinderADM001114 | phosphopyruvate hydratase complex phosphopyruvate hydratase activity strictosidine synthase activity alkaloid metabolic process trichome morphogenesis glycolytic process response to cytokinin biosynthetic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt secologanin and strictosidine biosynthesis vacuole magnesium ion binding Carbon metabolism Ubiquitin_Proteasome_system, E3: RING chloroplast stroma hydrolase activity | details |
| CFinderADM001314 | Carbon metabolism glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) magnesium ion binding mitochondrial respiratory chain complex III isocitrate dehydrogenase (NAD+) activity fructose-bisphosphate aldolase activity mitochondrial electron transport, ubiquinol to cytochrome c pyruvate kinase activity potassium ion binding aerobic respiration protein processing tricarboxylic acid cycle L-glutamine biosynthesis III TCA cycle II (plants and fungi) sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Rubisco shunt aerobic respiration I (cytochrome c) gluconeogenesis I metalloendopeptidase activity NAD binding kinase activity hydrolase activity cytoplasm | details |
| CFinderADM001640 | Hedgehog signaling pathway L-malate dehydrogenase activity Transcription_related, Transcription regulator: TRAF glyoxylate cycle TCA cycle II (plants and fungi) gluconeogenesis I malate metabolic process Ubiquitin_Proteasome_system, E3 adaptor: BTB chloroplast organization oxidation-reduction process Carbon metabolism transport carbohydrate metabolic process chloroplast envelope transferase activity translation oxidoreductase activity structural constituent of ribosome | details |
| CFinderADM001744 | formation of glycosidic bonds, GlycosylTransferases: GTnc glycoprotein 2-beta-D-xylosyltransferase activity monodehydroascorbate reductase (NADH) activity L-malate dehydrogenase activity glyoxylate cycle TCA cycle II (plants and fungi) oxidation-reduction process malate metabolic process regulation of translational initiation formation of translation preinitiation complex integral component of membrane stromule gluconeogenesis I eukaryotic 48S preinitiation complex eukaryotic translation initiation factor 3 complex eukaryotic 43S preinitiation complex Ascorbate and aldarate metabolism translation initiation factor activity endoplasmic reticulum membrane vacuolar membrane RNA transport transport Golgi apparatus Carbon metabolism Protein processing in endoplasmic reticulum carbohydrate metabolic process plasmodesma translation chloroplast stroma | details |
| CFinderADM002057 | potassium ion binding pyruvate kinase activity glycolytic process glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt metalloendopeptidase activity magnesium ion binding Carbon metabolism kinase activity proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |