CFinderADM002057's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| potassium ion binding | 0.000132924 | GO:0030955 |
| pyruvate kinase activity | 0.000132924 | GO:0004743 |
| glycolytic process | 0.000457857 | GO:0006096 |
| glycolysis I (from glucose 6-phosphate) | 0.000546633 | plantCyc |
| glycolysis IV (plant cytosol) | 0.000546633 | plantCyc |
| Rubisco shunt | 0.000546633 | plantCyc |
| metalloendopeptidase activity | 0.000875331 | GO:0004222 |
| magnesium ion binding | 0.003638028 | GO:0000287 |
| Carbon metabolism | 0.008328376 | KEGG pathway |
| kinase activity | 0.009372117 | GO:0016301 |
| proteolysis | 0.01066736 | GO:0006508 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001737 | AT1G57820 (1.00E-15) | ORTH2|ORTHRUS 2; VIM1|VARIANT IN METHYLATION 1 |
| CRO_T012459 | AT3G13410 (3.00E-65) | unknown protein |
| CRO_T016942 | AT1G01730 (4.00E-30) | unknown protein |
| CRO_T021079 | AT5G51740 (1.00E-31) | Peptidase family M48 family protein |
| CRO_T025972 | AT3G04050 (0) | Pyruvate kinase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000920 | negative regulation of chlorophyll biosynthetic process tetrapyrrole binding red or far-red light signaling pathway chloroplast-nucleus signaling pathway TCA cycle II (plants and fungi) MAPK signaling pathway integral component of endoplasmic reticulum membrane nuclear envelope Transcription_related, Transcription factor: RWP-RK cellular protein metabolic process Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII phosphoprotein phosphatase activity lyase activity protein dephosphorylation copper ion binding ligase activity ATP binding Carbon metabolism adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 plasmodesma metabolic process Ubiquitin_Proteasome_system, E3: RING protein serine/threonine kinase activity | details |
| CFinderADM001104 | polyubiquitin binding plastid organization proteasome assembly pyruvate kinase activity potassium ion binding aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis IV (plant cytosol) Rubisco shunt TCA cycle II (plants and fungi) proteasome regulatory particle, base subcomplex Proteasome SNARE interactions in vesicular transport glycolytic process vesicle fusion exocytosis glycolysis I (from glucose 6-phosphate) response to salt stress SNAP receptor activity SNARE binding proteasome-mediated ubiquitin-dependent protein catabolic process small GTPase mediated signal transduction SNARE complex magnesium ion binding vacuole GTP binding kinase activity Carbon metabolism intracellular hydrolase activity | details |
| CFinderADM001114 | phosphopyruvate hydratase complex phosphopyruvate hydratase activity strictosidine synthase activity alkaloid metabolic process trichome morphogenesis glycolytic process response to cytokinin biosynthetic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt secologanin and strictosidine biosynthesis vacuole magnesium ion binding Carbon metabolism Ubiquitin_Proteasome_system, E3: RING chloroplast stroma hydrolase activity | details |
| CFinderADM001314 | Carbon metabolism glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) magnesium ion binding mitochondrial respiratory chain complex III isocitrate dehydrogenase (NAD+) activity fructose-bisphosphate aldolase activity mitochondrial electron transport, ubiquinol to cytochrome c pyruvate kinase activity potassium ion binding aerobic respiration protein processing tricarboxylic acid cycle L-glutamine biosynthesis III TCA cycle II (plants and fungi) sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Rubisco shunt aerobic respiration I (cytochrome c) gluconeogenesis I metalloendopeptidase activity NAD binding kinase activity hydrolase activity cytoplasm | details |
| CFinderADM001354 | phosphatidylserine decarboxylase activity tRNA pseudouridine synthesis deaminase activity magnesium ion transmembrane transporter activity pseudouridine synthase activity magnesium ion transport magnesium ion transmembrane transport transport | details |
| CFinderADM001907 | fumarate hydratase activity tricarboxylic acid cycle enzyme complex fumarate metabolic process mitochondrial respiratory chain complex III protein tetramerization mitochondrial electron transport, ubiquinol to cytochrome c TCA cycle II (plants and fungi) aerobic respiration malate metabolic process protein processing aerobic respiration I (cytochrome c) tricarboxylic acid cycle Peroxisome metalloendopeptidase activity transport Carbon metabolism translation structural constituent of ribosome integral component of membrane mitochondrion | details |
| CFinderADM002250 | glycolytic process glycolysis IV (plant cytosol) glycolysis I (from glucose 6-phosphate) Carbon metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc ferredoxin-NADP+ reductase activity Other types of O-glycan biosynthesis fructose-bisphosphate aldolase activity potassium ion binding pyruvate kinase activity intracellular organelle photosynthesis light reactions sucrose biosynthesis I (from photosynthesis) Calvin-Benson-Bassham cycle Rubisco shunt gluconeogenesis I Golgi membrane Photosynthesis cell wall organization transferase activity, transferring glycosyl groups magnesium ion binding kinase activity cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |