CFinderADM001917's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription factor import into nucleus | 1.57E-05 | GO:0042991 |
| peptide metabolic process | 2.62E-05 | GO:0006518 |
| Transcription_related, Transcription factor: BES1 | 3.45E-05 | TF family |
| 3'-5' DNA helicase activity | 0.000130804 | GO:0043138 |
| brassinosteroid mediated signaling pathway | 0.000158787 | GO:0009742 |
| intracellular organelle | 0.000353166 | GO:0043229 |
| nuclear envelope | 0.000353166 | GO:0005635 |
| ATP-dependent helicase activity | 0.000373065 | GO:0008026 |
| DNA recombination | 0.000424317 | GO:0006310 |
| Ran GTPase binding | 0.00052364 | GO:0008536 |
| metalloendopeptidase activity | 0.001396209 | GO:0004222 |
| protein transporter activity | 0.001637292 | GO:0008565 |
| Homologous recombination | 0.003480892 | KEGG pathway |
| Plant hormone signal transduction | 0.007312041 | KEGG pathway |
| Purine metabolism | 0.007312041 | KEGG pathway |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.009195957 | cazy family |
| chloroplast thylakoid membrane | 0.015099843 | GO:0009535 |
| proteolysis | 0.021147528 | GO:0006508 |
| transcription factor activity, sequence-specific DNA binding | 0.023411093 | GO:0003700 |
| transcription, DNA-templated | 0.023651918 | GO:0006351 |
| nucleic acid binding | 0.033617881 | GO:0003676 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006079 | AT5G49530 (3.00E-101) | SIN-like family protein |
| CRO_T011596 | AT3G08960 (0) | ARM repeat superfamily protein |
| CRO_T014863 | AT5G61990 (1.00E-47) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T019732 | - | - |
| CRO_T020972 | AT5G51540 (0) | Zincin-like metalloproteases family protein |
| CRO_T031387 | AT1G19350 (6.00E-67) | BES1|BRI1-EMS-SUPPRESSOR 1; BZR2|BRASSINAZOLE-RESISTANT 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000632 | formation of glycosidic bonds, GlycosylTransferases: GTnc transcription, DNA-templated regulation of transcription, DNA-templated brassinosteroid mediated signaling pathway Transcription_related, Transcription factor: BES1 Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase phosphate acquisition transcription factor activity, sequence-specific DNA binding Transcription_related, Transcription factor: NAC Transcription_related, Transcription factor: ERF DNA binding zinc ion binding Plant hormone signal transduction cytoplasmic part endomembrane system | details |
| CFinderADM000919 | Plant hormone signal transduction Transcription_related, Transcription factor: BES1 Transcription_related, Transcription factor: Tify regulation of response to stimulus peptide metabolic process brassinosteroid mediated signaling pathway cation binding metalloendopeptidase activity protein serine/threonine phosphatase activity single-organism cellular process regulation of cellular process protein dephosphorylation Purine metabolism RNA transport chloroplast thylakoid membrane GTP binding transcription factor activity, sequence-specific DNA binding proteolysis transcription, DNA-templated | details |
| CFinderADM001181 | transcription factor import into nucleus nuclear envelope Ran GTPase binding protein transporter activity Transcription_related, Transcription factor: NAC formation of glycosidic bonds, GlycosylTransferases: GTnc transcription, DNA-templated Ubiquitin_Proteasome_system, E3: RING regulation of transcription, DNA-templated | details |
| CFinderADM002262 | transcription factor import into nucleus hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 Wnt signaling pathway nuclear envelope Ran GTPase binding integral component of membrane protein transporter activity hydrolase activity cytosol | details |
Expression profiles
 Show details about module gene expression profiling |