CFinderADM001925's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| polygalacturonate 4-alpha-galacturonosyltransferase activity | 0.0001006 | GO:0047262 |
| zinc ion transmembrane transporter activity | 0.000131982 | GO:0005385 |
| homogalacturonan biosynthesis | 0.000131982 | plantCyc |
| volatile benzenoid biosynthesis I (ester formation) | 0.000131982 | plantCyc |
| pectin biosynthetic process | 0.000153827 | GO:0045489 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000228718 | cazy family |
| zinc II ion transmembrane transport | 0.000232817 | GO:0071577 |
| Amino sugar and nucleotide sugar metabolism | 0.001130435 | KEGG pathway |
| cell wall organization | 0.003875121 | GO:0071555 |
| trans-Golgi network | 0.004727202 | GO:0005802 |
| Golgi membrane | 0.004727202 | GO:0000139 |
| endosome | 0.004727202 | GO:0005768 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002658 | AT5G61280 (2.00E-17) | Remorin family protein |
| CRO_T002999 | AT5G47950 (2.00E-54) | HXXXD-type acyl-transferase family protein |
| CRO_T004622 | - | - |
| CRO_T012433 | AT2G20810 (0) | GAUT10|galacturonosyltransferase 10 |
| CRO_T017996 | AT3G20870 (8.00E-110) | ZTP29|zinc transporter 29 |
| CRO_T021008 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001766 | polygalacturonate 4-alpha-galacturonosyltransferase activity homogalacturonan biosynthesis pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Amino sugar and nucleotide sugar metabolism Golgi membrane cell wall organization mitochondrial respiratory chain complex IV assembly Transcription_related, Transcription factor: HSF embryo development ending in seed dormancy copper ion binding trans-Golgi network endosome | details |
| CFinderADM001896 | transcription factor TFIIE complex Protein_kinases_phosphatases, PPC:1.13.2: Leucine Rich Repeat Kinase IV Protein_kinases_phosphatases, PPC:1.13.5: Leucine Rich Repeat Kinase III anaphase-promoting complex binding ubiquitin-protein transferase activator activity volatile benzenoid biosynthesis I (ester formation) transcription initiation from RNA polymerase II promoter protein phosphorylation Basal transcription factors regulation of catalytic activity cell division translational initiation Ubiquitin mediated proteolysis translation initiation factor activity Ubiquitin_Proteasome_system, E3 adaptor: DWD adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 ATP binding protein kinase activity | details |
| CFinderADM002080 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis fucosyltransferase activity Lewis a epitope biosynthetic process fucosylation Golgi cisterna membrane ubiquitin-protein transferase activator activity anaphase-promoting complex binding polygalacturonate 4-alpha-galacturonosyltransferase activity homogalacturonan biosynthesis volatile benzenoid biosynthesis I (ester formation) pectin biosynthetic process protein glycosylation regulation of catalytic activity phosphoprotein phosphatase activity cell division Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway Ubiquitin mediated proteolysis protein dephosphorylation Golgi membrane trans-Golgi network endosome cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM002251 | 3-oxo-5-alpha-steroid 4-dehydrogenase activity enoyl-[acyl-carrier-protein] reductase (NADH) activity transcription regulatory region sequence-specific DNA binding cellular response to gravity heterochromatin assembly mitochondrial respiratory chain complex IV assembly tubulin complex Phagosome chromatin silencing complex response to cadmium ion pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc chromatin silencing chromatin microtubule-based process structural constituent of cytoskeleton homogalacturonan biosynthesis very long chain fatty acid biosynthesis I chromatin binding very long chain fatty acid biosynthesis II Fatty acid metabolism Amino sugar and nucleotide sugar metabolism lipid metabolic process embryo development ending in seed dormancy GTPase activity copper ion binding microtubule Golgi membrane cell wall organization endosome apoplast trans-Golgi network GTP binding cell wall plasmodesma | details |
Expression profiles
 Show details about module gene expression profiling |