CFinderADM002251's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 1.70E-05 | GO:0003865 |
| enoyl-[acyl-carrier-protein] reductase (NADH) activity | 1.70E-05 | GO:0004318 |
| transcription regulatory region sequence-specific DNA binding | 2.83E-05 | GO:0000976 |
| cellular response to gravity | 3.83E-05 | GO:0071258 |
| heterochromatin assembly | 4.46E-05 | GO:0031507 |
| mitochondrial respiratory chain complex IV assembly | 4.46E-05 | GO:0033617 |
| tubulin complex | 5.65E-05 | GO:0045298 |
| Phagosome | 9.00E-05 | KEGG pathway |
| chromatin silencing complex | 9.88E-05 | GO:0005677 |
| response to cadmium ion | 0.000105139 | GO:0046686 |
| pectin biosynthetic process | 0.000115935 | GO:0045489 |
| polygalacturonate 4-alpha-galacturonosyltransferase activity | 0.000148156 | GO:0047262 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000156178 | cazy family |
| chromatin silencing | 0.000162334 | GO:0006342 |
| chromatin | 0.000172458 | GO:0000785 |
| microtubule-based process | 0.000190891 | GO:0007017 |
| structural constituent of cytoskeleton | 0.000192904 | GO:0005200 |
| homogalacturonan biosynthesis | 0.000291354 | plantCyc |
| very long chain fatty acid biosynthesis I | 0.000760025 | plantCyc |
| chromatin binding | 0.000768197 | GO:0003682 |
| very long chain fatty acid biosynthesis II | 0.000842859 | plantCyc |
| Fatty acid metabolism | 0.001047417 | KEGG pathway |
| Amino sugar and nucleotide sugar metabolism | 0.001263014 | KEGG pathway |
| lipid metabolic process | 0.002367157 | GO:0006629 |
| embryo development ending in seed dormancy | 0.002498666 | GO:0009793 |
| GTPase activity | 0.003124286 | GO:0003924 |
| copper ion binding | 0.003124286 | GO:0005507 |
| microtubule | 0.003880048 | GO:0005874 |
| Golgi membrane | 0.003880048 | GO:0000139 |
| cell wall organization | 0.003999085 | GO:0071555 |
| endosome | 0.005947501 | GO:0005768 |
| apoplast | 0.005947501 | GO:0048046 |
| trans-Golgi network | 0.005947501 | GO:0005802 |
| GTP binding | 0.00690378 | GO:0005525 |
| cell wall | 0.012260794 | GO:0005618 |
| plasmodesma | 0.015101201 | GO:0009506 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008382 | - | - |
| CRO_T010103 | AT4G04260 (2.00E-46) | Bromo-adjacent homology (BAH) domain-containing protein |
| CRO_T012433 | AT2G20810 (0) | GAUT10|galacturonosyltransferase 10 |
| CRO_T013219 | AT1G04820 (0) | TOR2|TORTIFOLIA 2; TUA4|tubulin alpha-4 chain |
| CRO_T027277 | AT3G08950 (2.00E-44) | HCC1|homologue of the copper chaperone SCO1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000188 | very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II enoyl-[acyl-carrier-protein] reductase (NADH) activity 3-oxo-5-alpha-steroid 4-dehydrogenase activity protein kinase binding Fatty acid elongation regulation of cyclin-dependent protein serine/threonine kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Fatty acid metabolism transferase activity, transferring acyl groups other than amino-acyl groups fatty acid biosynthetic process lipid metabolic process defense response kinase activity cytoplasmic part intracellular membrane-bounded organelle extracellular region cell wall phosphorylation | details |
| CFinderADM000505 | enoyl-[acyl-carrier-protein] reductase (NADH) activity 3-oxo-5-alpha-steroid 4-dehydrogenase activity spermine and spermidine degradation III N-acetyltransferase activity iron-sulfur cluster binding Arginine and proline metabolism Transcription_related, Transcription regulator: GNAT Fatty acid metabolism very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Transcription_related, Transcription factor: C2H2 defense response lipid metabolic process Ubiquitin_Proteasome_system, E3 adaptor: F-box sequence-specific DNA binding | details |
| CFinderADM000875 | enoyl-[acyl-carrier-protein] reductase (NADH) activity 3-oxo-5-alpha-steroid 4-dehydrogenase activity Fatty acid metabolism very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II defense response lipid metabolic process Ubiquitin_Proteasome_system, E3 adaptor: F-box cytoplasmic part cell wall intracellular membrane-bounded organelle extracellular region | details |
| CFinderADM000968 | cellular response to gravity tubulin complex Phagosome response to cadmium ion cell surface receptor signaling pathway microtubule-based process structural constituent of cytoskeleton plasma membrane microtubule apoplast GTPase activity cAMP-dependent protein kinase activity cell wall GTP binding plasmodesma Insulin signaling pathway Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase exocyst cell wall organization or biogenesis exocytosis protein phosphorylation glycolysis I (from glucose 6-phosphate) O-acetyltransferase activity cytosol polysaccharide binding protein dimerization activity Golgi apparatus adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001749 | endoplasmic reticulum-Golgi intermediate compartment UDP-glucose transport purine nucleotide-sugar transmembrane transport enoyl-[acyl-carrier-protein] reductase (NADH) activity 3-oxo-5-alpha-steroid 4-dehydrogenase activity nucleotide-sugar transmembrane transporter activity nucleotide transmembrane transport Fatty acid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II lipid metabolic process integral component of membrane | details |
| CFinderADM001766 | polygalacturonate 4-alpha-galacturonosyltransferase activity homogalacturonan biosynthesis pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Amino sugar and nucleotide sugar metabolism Golgi membrane cell wall organization mitochondrial respiratory chain complex IV assembly Transcription_related, Transcription factor: HSF embryo development ending in seed dormancy copper ion binding trans-Golgi network endosome | details |
| CFinderADM001925 | polygalacturonate 4-alpha-galacturonosyltransferase activity zinc ion transmembrane transporter activity homogalacturonan biosynthesis volatile benzenoid biosynthesis I (ester formation) pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc zinc II ion transmembrane transport Amino sugar and nucleotide sugar metabolism cell wall organization trans-Golgi network Golgi membrane endosome | details |
| CFinderADM001952 | Citrate cycle (TCA cycle) acetyl-CoA biosynthesis III (from citrate) superpathway of acetyl-CoA biosynthesis transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer cofactor binding transcription regulatory region sequence-specific DNA binding chromatin silencing complex heterochromatin assembly chromatin chromatin silencing chromatin binding formation of glycosidic bonds, GlycosylTransferases: GTnc metabolic process zinc ion binding | details |
| CFinderADM002043 | heterochromatin assembly transcription regulatory region sequence-specific DNA binding chromatin silencing complex chromatin chromatin silencing Protein_kinases_phosphatases, PPC:1.3.1: Receptor-like protein kinase formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: bZIP protein autophosphorylation chromatin binding microtubule response to oxidative stress adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 plasmodesma sequence-specific DNA binding | details |
| CFinderADM002080 | formation of glycosidic bonds, GlycosylTransferases: GTnc Various types of N-glycan biosynthesis fucosyltransferase activity Lewis a epitope biosynthetic process fucosylation Golgi cisterna membrane ubiquitin-protein transferase activator activity anaphase-promoting complex binding polygalacturonate 4-alpha-galacturonosyltransferase activity homogalacturonan biosynthesis volatile benzenoid biosynthesis I (ester formation) pectin biosynthetic process protein glycosylation regulation of catalytic activity phosphoprotein phosphatase activity cell division Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway Ubiquitin mediated proteolysis protein dephosphorylation Golgi membrane trans-Golgi network endosome cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM002086 | Golgi vesicle transport cysteinyl-tRNA aminoacylation mitochondrial respiratory chain complex IV assembly cysteine-tRNA ligase activity vesicle docking mitochondrion vesicle fusion SNARE interactions in vesicular transport Aminoacyl-tRNA biosynthesis SNARE complex SNAP receptor activity SNARE binding embryo development ending in seed dormancy intracellular protein transport trans-Golgi network copper ion binding nucleic acid binding nucleotide binding | details |
Expression profiles
 Show details about module gene expression profiling |