CFinderADM001981's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Betalain biosynthesis | 7.07E-07 | KEGG pathway |
| L-ornithine transmembrane transporter activity | 9.57E-06 | GO:0000064 |
| oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | 9.57E-06 | GO:0016701 |
| L-histidine transmembrane transporter activity | 9.57E-06 | GO:0005290 |
| arginine transmembrane transporter activity | 9.57E-06 | GO:0015181 |
| L-histidine transmembrane transport | 1.13E-05 | GO:0089709 |
| arginine transmembrane transport | 1.13E-05 | GO:1903826 |
| L-ornithine transmembrane transport | 1.13E-05 | GO:1903352 |
| cellular aromatic compound metabolic process | 1.41E-05 | GO:0006725 |
| L-lysine transmembrane transport | 1.41E-05 | GO:1903401 |
| L-arginine import | 1.41E-05 | GO:0043091 |
| proline biosynthetic process | 1.70E-05 | GO:0006561 |
| ornithine-citrulline shuttle | 1.84E-05 | plantCyc |
| L-lysine transmembrane transporter activity | 1.91E-05 | GO:0015189 |
| calcium-dependent cysteine-type endopeptidase activity | 2.23E-05 | GO:0004198 |
| ferrous iron binding | 3.28E-05 | GO:0008198 |
| Transcription_related, Transcription regulator: SET | 0.000410442 | TF family |
| carbohydrate binding | 0.002410177 | GO:0030246 |
| dioxygenase activity | 0.002552857 | GO:0051213 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.007086269 | ubs family |
| proteolysis | 0.012281083 | GO:0006508 |
| translation | 0.016228976 | GO:0006412 |
| structural constituent of ribosome | 0.020277856 | GO:0003735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011549 | AT1G12820 (0) | AFB3|auxin signaling F-box 3 |
| CRO_T022298 | AT4G15093 (2.00E-92) | AtLigB; LigB|catalytic LigB subunit of aromatic ring-opening dioxygenase family |
| CRO_T022316 | AT1G55350 (0) | DEK1|DEFECTIVE KERNEL 1; EMB1275|embryo defective 1275; EMB80|EMBRYO DEFECTIVE 80 |
| CRO_T023466 | AT4G39460 (9.00E-18) | SAMC1|S-adenosylmethionine carrier 1; SAMT1|SAM TRANSPORTER1 |
| CRO_T025089 | AT1G76620 (8.00E-80) | Protein of unknown function, DUF547 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000937 | Betalain biosynthesis fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) oxidoreductase activity, acting on single donors with incorporation of molecular oxygen delta3,5-delta2,4-dienoyl-CoA isomerase activity cellular aromatic compound metabolic process leucine catabolic process Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family ferrous iron binding Peroxisome iron-sulfur cluster assembly iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal ion binding protein homodimerization activity dioxygenase activity oxidation-reduction process ATP binding metabolic process protein kinase activity RNA binding oxidoreductase activity nucleotide binding | details |
| CFinderADM001273 | potassium ion transmembrane transporter activity potassium ion transmembrane transport Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001341 | DNA synthesis involved in DNA repair delta DNA polymerase complex box C/D snoRNP complex rRNA modification cell proliferation DNA-dependent DNA replication snoRNA binding DNA-directed DNA polymerase activity transcription coactivator activity leaf development Transcription_related, Transcription factor: B3 small-subunit processome protein binding Ribosome biogenesis in eukaryotes Purine metabolism Ubiquitin_Proteasome_system, E3 adaptor: F-box transcription, DNA-templated | details |
| CFinderADM001464 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination regulation of vesicle targeting, to, from or within Golgi Golgi medial cisterna ribosomal small subunit biogenesis cis-Golgi network intra-Golgi vesicle-mediated transport SNARE interactions in vesicular transport Transcription_related, Transcription regulator: SET Ubiquitin_Proteasome_system, E2: UBC vesicle fusion ER to Golgi vesicle-mediated transport protein transport SNARE binding SNAP receptor activity ubiquitin protein ligase binding SNARE complex Golgi membrane ligase activity ubiquitin protein ligase activity nucleolus RNA binding | details |
| CFinderADM001477 | calcium-dependent cysteine-type endopeptidase activity proteolysis protein-cysteine S-palmitoyltransferase activity cytoplasm integral component of membrane carbohydrate binding endoplasmic reticulum membrane zinc ion binding | details |
| CFinderADM002005 | Betalain biosynthesis pullulanase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen 3 iron, 4 sulfur cluster binding limit dextrinase activity succinate dehydrogenase (ubiquinone) activity calcium-dependent cysteine-type endopeptidase activity cellular aromatic compound metabolic process ferrous iron binding starch catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc starch biosynthetic process Transcription_related, Transcription regulator: SET TCA cycle II (plants and fungi) tricarboxylic acid cycle aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) 2 iron, 2 sulfur cluster binding 4 iron, 4 sulfur cluster binding dioxygenase activity electron carrier activity carbohydrate binding mitochondrial inner membrane Carbon metabolism proteolysis chloroplast stroma | details |
| CFinderADM002107 | Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
Expression profiles
 Show details about module gene expression profiling |