CFinderADM002036's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA biosynthetic process | 1.83E-05 | GO:0032774 |
| xylogalacturonan biosynthesis | 6.49E-05 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.000147759 | cazy family |
| endonuclease activity | 0.000374092 | GO:0004519 |
| nucleic acid phosphodiester bond hydrolysis | 0.000593774 | GO:0090305 |
| DNA-directed RNA polymerase activity | 0.000620087 | GO:0003899 |
| DNA binding | 0.034377338 | GO:0003677 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001025 | AT1G27440 (3.00E-24) | ATGUT1; GUT2; IRX10|Exostosin family protein |
| CRO_T021374 | AT5G24000 (1.00E-111) | Protein of unknown function (DUF819) |
| CRO_T024505 | - | - |
| CRO_T025180 | AT1G67660 (2.00E-93) | Restriction endonuclease, type II-like superfamily protein |
| CRO_T027992 | AT4G29400 (2.00E-96) | Protein of unknown function (DUF3531) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001389 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein glycosylation galactosyltransferase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis heterocyclic compound binding organic cyclic compound binding Golgi membrane DNA binding | details |
| CFinderADM001738 | ferric iron transport ferric-transporting ATPase activity plastid organization translational termination translation release factor activity, codon specific ribosome binding RNA processing chloroplast stroma | details |
| CFinderADM001826 | heme biosynthetic process mitochondrial translation aminoacyl-tRNA hydrolase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: SWI/SNF-BAF60b heme biosynthesis I (aerobic) 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) chloroplast part Porphyrin and chlorophyll metabolism oxidoreductase activity mitochondrion | details |
| CFinderADM002027 | tetracyclic triterpenoid biosynthetic process calcium:proton antiporter activity cycloartenol synthase activity plant sterol biosynthesis II mangrove triterpenoid biosynthesis cytoplasmic microtubule organization calcium ion transmembrane transport Steroid biosynthesis plant sterol biosynthesis microtubule-severing ATPase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis | details |
| CFinderADM002215 | Protein_kinases_phosphatases, PPC:1.3.2: Leucine Rich Repeat Receptor VIII D-myo-inositol-5-phosphate metabolism phosphatidylinositol phospholipase C activity Cytochrome_P450, Cytochrome P450: CYP71B D-myo-inositol (1,4,5)-trisphosphate biosynthesis phosphatidate metabolism, as a signaling molecule Inositol phosphate metabolism phospholipases endonuclease activity signal transducer activity lipid catabolic process lipid binding nucleic acid phosphodiester bond hydrolysis intracellular signal transduction secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 endoplasmic reticulum intracellular phosphorylation protein kinase activity iron ion binding heme binding nucleotide binding | details |
| CFinderADM002286 | Transcription_related, Transcription factor: LOB benzoate biosynthesis I (CoA-dependent, β-oxidative) triacylglycerol degradation Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM002291 | transmembrane receptor protein serine/threonine kinase binding cytoplasm nucleus protein ubiquitination magnesium ion binding GTPase activity ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3: U-box GTP binding Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |