CFinderADM002063's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein targeting to membrane | 6.91E-05 | GO:0006612 |
| plasmodesma | 0.00020077 | GO:0009506 |
| protein N-glycosylation (eukaryotic, high mannose) | 0.000478992 | plantCyc |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.000753684 | kinase family |
| phospholipases | 0.000779474 | plantCyc |
| Cell cycle - Caulobacter | 0.000844941 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.00112956 | KEGG pathway |
| Inositol phosphate metabolism | 0.001241135 | KEGG pathway |
| signal transducer activity | 0.001988038 | GO:0004871 |
| calcium-dependent protein serine/threonine kinase activity | 0.001988038 | GO:0009931 |
| ATP-dependent peptidase activity | 0.001988038 | GO:0004176 |
| cysteine-type endopeptidase activity | 0.001988038 | GO:0004197 |
| calmodulin-dependent protein kinase activity | 0.001988038 | GO:0004683 |
| SNARE binding | 0.002093723 | GO:0000149 |
| SNAP receptor activity | 0.002093723 | GO:0005484 |
| extracellular space | 0.002626355 | GO:0005615 |
| mitochondrial matrix | 0.002626355 | GO:0005759 |
| SNARE complex | 0.002626355 | GO:0031201 |
| Lysosome | 0.002626355 | KEGG pathway |
| vesicle docking | 0.002646424 | GO:0048278 |
| plasma membrane | 0.003172687 | GO:0005886 |
| Transcription_related, Transcription factor: MYB | 0.003564906 | TF family |
| unfolded protein binding | 0.003601122 | GO:0051082 |
| hydrolase activity, acting on ester bonds | 0.00392408 | GO:0016788 |
| vesicle fusion | 0.004009191 | GO:0006906 |
| protein catabolic process | 0.004009191 | GO:0030163 |
| calmodulin binding | 0.004372995 | GO:0005516 |
| protein autophosphorylation | 0.00464288 | GO:0046777 |
| abscisic acid-activated signaling pathway | 0.00464288 | GO:0009738 |
| peptidyl-serine phosphorylation | 0.00464288 | GO:0018105 |
| proteolysis involved in cellular protein catabolic process | 0.005776683 | GO:0051603 |
| signal transduction | 0.006804101 | GO:0007165 |
| defense response | 0.006804101 | GO:0006952 |
| intracellular signal transduction | 0.007505136 | GO:0035556 |
| anchored component of plasma membrane | 0.007516746 | GO:0046658 |
| integral component of membrane | 0.009850332 | GO:0016021 |
| protein folding | 0.010128403 | GO:0006457 |
| calcium ion binding | 0.023131958 | GO:0005509 |
| endoplasmic reticulum | 0.025531931 | GO:0005783 |
| ATP binding | 0.030564682 | GO:0005524 |
| proteolysis | 0.048527885 | GO:0006508 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003412 | AT3G09740 (2.00E-102) | SYP71|syntaxin of plants 71 |
| CRO_T017240 | AT5G22870 (2.00E-15) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T017489 | AT1G07230 (0) | NPC1|non-specific phospholipase C1 |
| CRO_T018286 | AT5G45890 (3.00E-112) | SAG12|senescence-associated gene 12 |
| CRO_T019765 | - | - |
| CRO_T025186 | AT3G61250 (3.00E-68) | AtMYB17|myb domain protein 17; LMI2|LATE MERISTEM IDENTITY2 |
| CRO_T026597 | AT3G04590 (1.00E-26) | AHL14|AT-hook motif nuclear localized protein 14 |
| CRO_T027645 | AT1G49580 (0) | Calcium-dependent protein kinase (CDPK) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000687 | details | |
| CFinderADM001407 | protein targeting to membrane plasmodesma protein N-glycosylation (eukaryotic, high mannose) SNARE interactions in vesicular transport cysteine-type endopeptidase activity SNAP receptor activity signal transducer activity SNARE binding vesicle docking integral component of membrane extracellular space Lysosome SNARE complex vesicle fusion hydrogen peroxide catabolic process peroxidase activity proteolysis involved in cellular protein catabolic process response to oxidative stress defense response signal transduction cellular oxidant detoxification Phenylpropanoid biosynthesis anchored component of plasma membrane transport extracellular region endoplasmic reticulum intracellular heme binding | details |
| CFinderADM002017 | sucrose-phosphate synthase activity sucrose synthase activity RNA modification sucrose metabolic process RNA splicing formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Starch and sucrose metabolism Ubiquitin_Proteasome_system, E3: RING zinc ion binding plasma membrane | details |
| CFinderADM002064 | Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase farnesylcysteine salvage pathway geraniol and geranial biosynthesis mannitol degradation II Cell cycle - Caulobacter acetaldehyde biosynthesis I detoxification of reactive carbonyls in chloroplasts pyruvate fermentation to ethanol II traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phospholipases Inositol phosphate metabolism ATP-dependent peptidase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity signal transducer activity plastoglobule Phenylpropanoid biosynthesis mitochondrial matrix unfolded protein binding hydrolase activity, acting on ester bonds calmodulin binding peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation protein catabolic process signal transduction defense response intracellular signal transduction anchored component of plasma membrane protein folding ATP binding calcium ion binding plasmodesma proteolysis metabolic process oxidoreductase activity | details |
| CFinderADM002065 | protein targeting to membrane plasmodesma regulation of shoot system development vesicle docking cell differentiation SNARE interactions in vesicular transport Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase vesicle fusion calcium-dependent protein serine/threonine kinase activity signal transducer activity calmodulin-dependent protein kinase activity SNARE binding SNAP receptor activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway SNARE complex plasma membrane Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: GRAS calmodulin binding defense response signal transduction intracellular signal transduction anchored component of plasma membrane integral component of membrane nucleus Plant hormone signal transduction endoplasmic reticulum calcium ion binding sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM002066 | Cytochrome_P450, Cytochrome P450: CYP73A trans-cinnamate 4-monooxygenase activity protein targeting to membrane plasmodesma phenylpropanoid biosynthesis, initial reactions Transcription_related, Transcription regulator: LIM Degradation of aromatic compounds lignin metabolic process phenylalanine ammonia-lyase activity SNARE interactions in vesicular transport vesicle docking signal transducer activity suberin monomers biosynthesis vesicle fusion SNAP receptor activity SNARE binding SNARE complex integral component of membrane intracellular part defense response signal transduction secondary metabolite biosynthetic process anchored component of plasma membrane endoplasmic reticulum iron ion binding heme binding | details |
| CFinderADM002067 | histone H4-K5 acetylation regulation of timing of transition from vegetative to reproductive phase NuA4 histone acetyltransferase complex regulation of organ growth regulation of flower development ethylene biosynthesis I (plants) leucodelphinidin biosynthesis pinobanksin biosynthesis Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) auxin polar transport signal transducer activity defense response signal transduction anchored component of plasma membrane methyltransferase activity methylation plasmodesma RNA binding oxidoreductase activity regulation of transcription, DNA-templated | details |
| CFinderADM002234 | protein targeting to membrane ubiquinone biosynthetic process extrinsic component of mitochondrial inner membrane Transcription_related, Transcription regulator: LIM regulation of cell cycle cyclin-dependent protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase vesicle docking SNARE interactions in vesicular transport vesicle fusion plasma membrane SNARE binding SNAP receptor activity SNARE complex carbohydrate binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 endoplasmic reticulum plasmodesma integral component of membrane protein phosphorylation | details |
| CFinderADM002261 | protein targeting to membrane CIA complex SNARE interactions in vesicular transport iron-sulfur cluster assembly vesicle docking vesicle fusion peptidyl-tyrosine phosphorylation adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity SNARE binding SNAP receptor activity SNARE complex transferase activity, transferring acyl groups GTP binding endoplasmic reticulum Ubiquitin_Proteasome_system, E3 adaptor: DWD plasmodesma hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |