CFinderADM002261's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| protein targeting to membrane | 1.01E-05 | GO:0006612 |
| CIA complex | 1.29E-05 | GO:0097361 |
| SNARE interactions in vesicular transport | 0.000254375 | KEGG pathway |
| iron-sulfur cluster assembly | 0.000336083 | GO:0016226 |
| vesicle docking | 0.000336083 | GO:0048278 |
| vesicle fusion | 0.000442931 | GO:0006906 |
| peptidyl-tyrosine phosphorylation | 0.000633494 | GO:0018108 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.00101968 | cazy family |
| Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | 0.00101968 | kinase family |
| non-membrane spanning protein tyrosine kinase activity | 0.001354074 | GO:0004715 |
| SNARE binding | 0.001354074 | GO:0000149 |
| SNAP receptor activity | 0.001354074 | GO:0005484 |
| SNARE complex | 0.001661522 | GO:0031201 |
| transferase activity, transferring acyl groups | 0.001858022 | GO:0016746 |
| GTP binding | 0.01526867 | GO:0005525 |
| endoplasmic reticulum | 0.016328242 | GO:0005783 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.016463352 | ubs family |
| plasmodesma | 0.017746147 | GO:0009506 |
| hydrolase activity | 0.034882526 | GO:0016787 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003412 | AT3G09740 (2.00E-102) | SYP71|syntaxin of plants 71 |
| CRO_T005382 | AT5G13480 (2.00E-10) | FY|Transducin/WD40 repeat-like superfamily protein |
| CRO_T005400 | AT1G33870 (4.00E-36) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T021496 | AT1G21740 (0.000007) | Protein of unknown function (DUF630 and DUF632) |
| CRO_T031401 | AT3G09830 (4.00E-156) | Protein kinase superfamily protein |
| CRO_T032413 | AT3G19540 (1.00E-169) | Protein of unknown function (DUF620) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000606 | SNARE complex assembly regulation of vesicle-mediated transport cellular amino acid catabolic process menaquinone biosynthetic process chloroplast stroma lytic vacuole 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity magnesium chelatase activity 1,4-dihydroxy-2-naphthoate biosynthesis II (plants) 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) chlorophyll biosynthetic process thiamine pyrophosphate binding Porphyrin and chlorophyll metabolism Ubiquinone and other terpenoid-quinone biosynthesis chloroplast thylakoid SNARE binding Photosynthesis endosome Ribosome methyltransferase activity methylation GTP binding translation RNA binding hydrolase activity structural constituent of ribosome | details |
| CFinderADM001051 | Ribosome magnesium chelatase activity RNA binding structural constituent of ribosome translation 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) chlorophyll biosynthetic process maturation of LSU-rRNA Porphyrin and chlorophyll metabolism Photosynthesis chloroplast thylakoid cytosolic large ribosomal subunit GTP binding hydrolase activity chloroplast stroma | details |
| CFinderADM001202 | N-acyltransferase activity spermidine hydroxycinnamic acid conjugates biosynthesis | details |
| CFinderADM001407 | protein targeting to membrane plasmodesma protein N-glycosylation (eukaryotic, high mannose) SNARE interactions in vesicular transport cysteine-type endopeptidase activity SNAP receptor activity signal transducer activity SNARE binding vesicle docking integral component of membrane extracellular space Lysosome SNARE complex vesicle fusion hydrogen peroxide catabolic process peroxidase activity proteolysis involved in cellular protein catabolic process response to oxidative stress defense response signal transduction cellular oxidant detoxification Phenylpropanoid biosynthesis anchored component of plasma membrane transport extracellular region endoplasmic reticulum intracellular heme binding | details |
| CFinderADM001975 | folic acid binding phosphatidylinositol-3,5-bisphosphate binding CIA complex phosphatidylinositol-3-phosphate binding protein folding in endoplasmic reticulum protein lipidation ER membrane protein complex pre-autophagosomal structure membrane protein localization to pre-autophagosomal structure mitophagy nucleophagy extrinsic component of membrane iron-sulfur cluster assembly Transcription_related, Transcription factor: G2-like transferase activity, transferring acyl groups Ubiquitin_Proteasome_system, E3 adaptor: DWD transferase activity metabolic process cytosol | details |
| CFinderADM002063 | protein targeting to membrane plasmodesma protein N-glycosylation (eukaryotic, high mannose) Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase phospholipases Cell cycle - Caulobacter SNARE interactions in vesicular transport Inositol phosphate metabolism signal transducer activity calcium-dependent protein serine/threonine kinase activity ATP-dependent peptidase activity cysteine-type endopeptidase activity calmodulin-dependent protein kinase activity SNARE binding SNAP receptor activity extracellular space mitochondrial matrix SNARE complex Lysosome vesicle docking plasma membrane Transcription_related, Transcription factor: MYB unfolded protein binding hydrolase activity, acting on ester bonds vesicle fusion protein catabolic process calmodulin binding protein autophosphorylation abscisic acid-activated signaling pathway peptidyl-serine phosphorylation proteolysis involved in cellular protein catabolic process signal transduction defense response intracellular signal transduction anchored component of plasma membrane integral component of membrane protein folding calcium ion binding endoplasmic reticulum ATP binding proteolysis | details |
| CFinderADM002065 | protein targeting to membrane plasmodesma regulation of shoot system development vesicle docking cell differentiation SNARE interactions in vesicular transport Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase vesicle fusion calcium-dependent protein serine/threonine kinase activity signal transducer activity calmodulin-dependent protein kinase activity SNARE binding SNAP receptor activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway SNARE complex plasma membrane Transcription_related, Transcription factor: ERF Transcription_related, Transcription factor: GRAS calmodulin binding defense response signal transduction intracellular signal transduction anchored component of plasma membrane integral component of membrane nucleus Plant hormone signal transduction endoplasmic reticulum calcium ion binding sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding | details |
| CFinderADM002066 | Cytochrome_P450, Cytochrome P450: CYP73A trans-cinnamate 4-monooxygenase activity protein targeting to membrane plasmodesma phenylpropanoid biosynthesis, initial reactions Transcription_related, Transcription regulator: LIM Degradation of aromatic compounds lignin metabolic process phenylalanine ammonia-lyase activity SNARE interactions in vesicular transport vesicle docking signal transducer activity suberin monomers biosynthesis vesicle fusion SNAP receptor activity SNARE binding SNARE complex integral component of membrane intracellular part defense response signal transduction secondary metabolite biosynthetic process anchored component of plasma membrane endoplasmic reticulum iron ion binding heme binding | details |
| CFinderADM002234 | protein targeting to membrane ubiquinone biosynthetic process extrinsic component of mitochondrial inner membrane Transcription_related, Transcription regulator: LIM regulation of cell cycle cyclin-dependent protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase vesicle docking SNARE interactions in vesicular transport vesicle fusion plasma membrane SNARE binding SNAP receptor activity SNARE complex carbohydrate binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 endoplasmic reticulum plasmodesma integral component of membrane protein phosphorylation | details |
| CFinderADM002260 | formation of glycosidic bonds, GlycosylTransferases: GTnc CIA complex single organismal cell-cell adhesion pectic galactan metabolic process heparan sulfate proteoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity glycosaminoglycan biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis iron-sulfur cluster assembly adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation response to abscisic acid transferase activity, transferring acyl groups endosome trans-Golgi network GTP binding Ubiquitin_Proteasome_system, E3 adaptor: DWD hydrolase activity | details |
Expression profiles
 Show details about module gene expression profiling |