CFinderADM002069's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| zinc ion binding | 0.000398416 | GO:0008270 |
| cytosolic large ribosomal subunit | 0.002362519 | GO:0022625 |
| translation | 0.010826115 | GO:0006412 |
| Protein processing in endoplasmic reticulum | 0.013026131 | KEGG pathway |
| Ribosome | 0.013026131 | KEGG pathway |
| structural constituent of ribosome | 0.015602118 | GO:0003735 |
| RNA binding | 0.015602118 | GO:0003723 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.016288271 | cazy family |
| Ubiquitin_Proteasome_system, E3: RING | 0.016288271 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006571 | AT4G12340 (6.00E-32) | copper ion binding |
| CRO_T007770 | AT4G34100 (0) | CER9|ECERIFERUM 9; SUD1|SUPPRESSOR OF DRY2 DEFECTS 1 |
| CRO_T015048 | AT3G05590 (9.00E-93) | RPL18|ribosomal protein L18 |
| CRO_T020051 | AT2G29760 (6.00E-117) | OTP81|ORGANELLE TRANSCRIPT PROCESSING 81 |
| CRO_T032809 | AT3G16890 (6.00E-32) | PPR40|pentatricopeptide (PPR) domain protein 40 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000670 | prefoldin complex MicroRNAs in cancer small GTPase mediated signal transduction unfolded protein binding protein folding Endocytosis Protein processing in endoplasmic reticulum GTP binding integral component of membrane Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001320 | Ino80 complex chromatin remodeling Transcriptional misregulation in cancers small GTPase mediated signal transduction Endocytosis Protein processing in endoplasmic reticulum intracellular GTP binding Ubiquitin_Proteasome_system, E3: RING regulation of transcription, DNA-templated | details |
| CFinderADM001420 | Mitophagy - yeast proteolysis phenylpropanoid biosynthetic process redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 guiding stereospecific synthesis activity microtubule-severing ATPase activity poly(A) RNA binding spliceosomal complex regulation of catalytic activity mRNA splicing, via spliceosome metalloendopeptidase activity ATP-dependent RNA helicase activity copper ion binding serine-type endopeptidase activity Spliceosome Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM002252 | Ubiquitin_Proteasome_system, E3 adaptor: DWD L-amino acid transport L-alpha-amino acid transmembrane transport Set1C/COMPASS complex MicroRNAs in cancer Transcriptional misregulation in cancers L-amino acid transmembrane transporter activity histone binding vegetative to reproductive phase transition of meristem antiporter activity integral component of plasma membrane Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING transcription, DNA-templated regulation of transcription, DNA-templated zinc ion binding | details |
Expression profiles
 Show details about module gene expression profiling |