CFinderADM002252's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 2.22E-06 | ubs family |
| L-amino acid transport | 2.42E-05 | GO:0015807 |
| L-alpha-amino acid transmembrane transport | 2.42E-05 | GO:1902475 |
| Set1C/COMPASS complex | 2.56E-05 | GO:0048188 |
| MicroRNAs in cancer | 6.92E-05 | KEGG pathway |
| Transcriptional misregulation in cancers | 6.92E-05 | KEGG pathway |
| L-amino acid transmembrane transporter activity | 9.39E-05 | GO:0015179 |
| histone binding | 0.000196766 | GO:0042393 |
| vegetative to reproductive phase transition of meristem | 0.000248459 | GO:0010228 |
| antiporter activity | 0.001209654 | GO:0015297 |
| integral component of plasma membrane | 0.006384629 | GO:0005887 |
| Protein processing in endoplasmic reticulum | 0.006511722 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.010858848 | ubs family |
| transcription, DNA-templated | 0.015436795 | GO:0006351 |
| regulation of transcription, DNA-templated | 0.034345441 | GO:0006355 |
| zinc ion binding | 0.047309879 | GO:0008270 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007770 | AT4G34100 (0) | CER9|ECERIFERUM 9; SUD1|SUPPRESSOR OF DRY2 DEFECTS 1 |
| CRO_T011592 | - | - |
| CRO_T013458 | AT1G58030 (9.00E-94) | CAT2|cationic amino acid transporter 2 |
| CRO_T022276 | AT3G15470 (9.00E-21) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T028585 | AT3G27310 (2.00E-69) | PUX1|plant UBX domain-containing protein 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000670 | prefoldin complex MicroRNAs in cancer small GTPase mediated signal transduction unfolded protein binding protein folding Endocytosis Protein processing in endoplasmic reticulum GTP binding integral component of membrane Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001320 | Ino80 complex chromatin remodeling Transcriptional misregulation in cancers small GTPase mediated signal transduction Endocytosis Protein processing in endoplasmic reticulum intracellular GTP binding Ubiquitin_Proteasome_system, E3: RING regulation of transcription, DNA-templated | details |
| CFinderADM001420 | Mitophagy - yeast proteolysis phenylpropanoid biosynthetic process redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 guiding stereospecific synthesis activity microtubule-severing ATPase activity poly(A) RNA binding spliceosomal complex regulation of catalytic activity mRNA splicing, via spliceosome metalloendopeptidase activity ATP-dependent RNA helicase activity copper ion binding serine-type endopeptidase activity Spliceosome Protein processing in endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING | details |
| CFinderADM001836 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase integral component of plasma membrane L-amino acid transport long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay L-alpha-amino acid transmembrane transport sugar mediated signaling pathway COPII vesicle coat response to wounding cytoplasmic mRNA processing body salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cytosol zinc ion binding ER to Golgi vesicle-mediated transport amino acid transmembrane transport defense response to bacterium helicase activity RNA transport intracellular protein transport kinase activity plasmodesma phosphorylation | details |
| CFinderADM002069 | zinc ion binding cytosolic large ribosomal subunit translation Protein processing in endoplasmic reticulum Ribosome structural constituent of ribosome RNA binding formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3: RING | details |
Expression profiles
 Show details about module gene expression profiling |