CFinderADM002075's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of DNA endoreduplication | 1.28E-05 | GO:0032875 |
| regulation of root meristem growth | 1.28E-05 | GO:0010082 |
| regulation of cell division | 1.59E-05 | GO:0051302 |
| thioredoxin pathway | 2.82E-05 | plantCyc |
| Arginine and proline metabolism | 0.000109146 | KEGG pathway |
| L-ascorbic acid binding | 0.000241911 | GO:0031418 |
| Transcription_related, Transcription factor: C3H | 0.000861707 | TF family |
| Transcription_related, Transcription factor: MYB | 0.001351594 | TF family |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.004048803 | GO:0016705 |
| iron ion binding | 0.010849662 | GO:0005506 |
| mitochondrion | 0.028676227 | GO:0005739 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004435 | AT5G20500 (3.00E-12) | Glutaredoxin family protein |
| CRO_T004844 | AT1G29570 (4.00E-09) | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| CRO_T008146 | AT1G47740 (4.00E-101) | PPPDE putative thiol peptidase family protein |
| CRO_T008979 | AT3G28480 (1.00E-102) | Oxoglutarate/iron-dependent oxygenase |
| CRO_T024699 | AT5G13610 (8.00E-93) | Protein of unknown function (DUF155) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000433 | protein phosphatase 2A binding Transcription_related, Transcription factor: CAMTA regulation of dephosphorylation regulation of root meristem growth regulation of DNA endoreduplication regulation of cell division regulation of signal transduction Transcription_related, Transcription regulator: Jumonji protein phosphatase type 2A regulator activity Autophagy - animal lipid binding cytosol protein transport Endocytosis response to oxidative stress transferase activity | details |
| CFinderADM000968 | cellular response to gravity tubulin complex Phagosome response to cadmium ion cell surface receptor signaling pathway microtubule-based process structural constituent of cytoskeleton plasma membrane microtubule apoplast GTPase activity cAMP-dependent protein kinase activity cell wall GTP binding plasmodesma Insulin signaling pathway Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase exocyst cell wall organization or biogenesis exocytosis protein phosphorylation glycolysis I (from glucose 6-phosphate) O-acetyltransferase activity cytosol polysaccharide binding protein dimerization activity Golgi apparatus adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001017 | Fanconi anemia pathway CO2 fixation into oxaloacetate (anaplerotic) phosphoenolpyruvate carboxylase activity medium-chain-(S)-2-hydroxy-acid oxidase activity very-long-chain-(S)-2-hydroxy-acid oxidase activity long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity Carbon metabolism response to gamma radiation multicellular organism reproduction telomere maintenance via telomerase regulation of telomere maintenance regulation of DNA endoreduplication response to aluminum ion regulation of root meristem growth meiotic nuclear division regulation of cell division response to abiotic stimulus carbon fixation double-strand break repair via nonhomologous end joining L-glutamine biosynthesis III biological regulation Transcription_related, Transcription factor: HSF tricarboxylic acid cycle amino acid transmembrane transporter activity FMN binding amino acid transmembrane transport response to stress DNA repair | details |
| CFinderADM001891 | oxoglutarate dehydrogenase complex nuclear heterochromatin Carbon metabolism regulation of methylation-dependent chromatin silencing maintenance of DNA methylation 2-oxoglutarate decarboxylation to succinyl-CoA glycolytic process through fructose-6-phosphate fructose 6-phosphate metabolic process oxoglutarate dehydrogenase (succinyl-transferring) activity Arginine and proline metabolism thiamine pyrophosphate binding 6-phosphofructokinase activity L-ascorbic acid binding histone binding tricarboxylic acid cycle endonuclease activity glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) nucleic acid phosphodiester bond hydrolysis Transcription_related, Transcription factor: MYB Ubiquitin_Proteasome_system, E3: U-box protein ubiquitination ubiquitin protein ligase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Ubiquitin_Proteasome_system, E3: RING iron ion binding nucleic acid binding | details |
| CFinderADM001967 | phytol salvage pathway phytol kinase activity 5-deoxystrigol biosynthesis Glycosaminoglycan degradation vitamin E biosynthetic process Arginine and proline metabolism L-ascorbic acid binding Transcription_related, Transcription factor: MYB oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen integral component of membrane iron ion binding phosphorylation chloroplast thylakoid membrane | details |
Expression profiles
 Show details about module gene expression profiling |