CFinderADM002078's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| detection of hypoxia | 8.97E-06 | GO:0070483 |
| peptidyl-cysteine oxidation | 8.97E-06 | GO:0018171 |
| anaerobic respiration | 8.97E-06 | GO:0009061 |
| heme biosynthetic process | 8.97E-06 | GO:0006783 |
| ferrochelatase activity | 1.15E-05 | GO:0004325 |
| heme biosynthesis I (aerobic) | 1.30E-05 | plantCyc |
| Taurine and hypotaurine metabolism | 1.37E-05 | KEGG pathway |
| oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 8.82E-05 | GO:0016702 |
| Porphyrin and chlorophyll metabolism | 0.000322033 | KEGG pathway |
| Transcription_related, Transcription factor: bHLH | 0.000773274 | TF family |
| protein dimerization activity | 0.002171986 | GO:0046983 |
| integral component of membrane | 0.018006186 | GO:0016021 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004390 | AT5G54090 (0) | DNA mismatch repair protein MutS, type 2 |
| CRO_T008474 | AT1G18490 (3.00E-81) | Protein of unknown function (DUF1637) |
| CRO_T010471 | AT5G54680 (4.00E-18) | bHLH105|basic Helix-Loop-Helix 105; ILR3|iaa-leucine resistant3 |
| CRO_T011951 | AT1G52910 (4.00E-59) | Protein of unknown function (DUF1218) |
| CRO_T019991 | AT2G30390 (2.00E-179) | FC2|ferrochelatase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000900 | TFIIK complex Transcription_related, Transcription factor: Alfin-like FAD diphosphatase activity flavin-containing compound metabolic process Cytochrome_P450, Cytochrome P450: CYP81D Taurine and hypotaurine metabolism positive regulation of phosphorylation of RNA polymerase II C-terminal domain anaerobic respiration positive regulation of cyclin-dependent protein serine/threonine kinase activity peptidyl-cysteine oxidation detection of hypoxia response to abiotic stimulus cyclin-dependent protein kinase holoenzyme complex Indole alkaloid biosynthesis cyclin-dependent protein serine/threonine kinase regulator activity sesamin biosynthesis positive regulation of transcription from RNA polymerase II promoter indole glucosinolate metabolic process defense response to other organism oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen hydrolase activity histone binding Basal transcription factors secondary metabolite biosynthetic process oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen Purine metabolism | details |
| CFinderADM001066 | polyprenyltransferase activity acetyl-CoA C-acetyltransferase activity queuine tRNA-ribosyltransferase activity mevalonate pathway I ubiquinone biosynthetic process queuosine biosynthetic process integral component of mitochondrial inner membrane cell plate cytokinesis by cell plate formation isoprenoid biosynthetic process microtubule-severing ATPase activity Ubiquinone and other terpenoid-quinone biosynthesis small GTPase mediated signal transduction cell redox homeostasis Endocytosis endosome GTP binding metabolic process Carbon metabolism hydrolase activity | details |
| CFinderADM001597 | clathrin coat of coated pit clathrin coat of trans-Golgi network vesicle clathrin heavy chain binding clathrin-mediated endocytosis acetyl-CoA C-acetyltransferase activity structural molecule activity Transcription_related, Transcription factor: bHLH protein dimerization activity intracellular protein transport RNA transport Carbon metabolism metabolic process | details |
| CFinderADM001675 | Transcription_related, Transcription regulator: DDT DNA topoisomerase activity RNA binding | details |
| CFinderADM001724 | monovalent cation:proton antiporter activity regulation of pH hydrogen ion transmembrane transport endomembrane system | details |
| CFinderADM002077 | triphosphatase activity anaerobic respiration peptidyl-cysteine oxidation detection of hypoxia Taurine and hypotaurine metabolism ATG1/ULK1 kinase complex autophagy Autophagy - animal oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Peroxisome root development ATPase activity metabolic process hydrolase activity | details |
| CFinderADM002289 | clathrin coat of trans-Golgi network vesicle clathrin coat of coated pit 3-dehydroquinate biosynthesis I clathrin heavy chain binding ferrochelatase activity 3-deoxy-7-phosphoheptulonate synthase activity clathrin-mediated endocytosis heme biosynthetic process heme biosynthesis I (aerobic) Transcription_related, Transcription regulator: DDT aromatic amino acid family biosynthetic process structural molecule activity lyase activity Porphyrin and chlorophyll metabolism Transcription_related, Transcription factor: bHLH Biosynthesis of amino acids protein dimerization activity intracellular protein transport | details |
Expression profiles
 Show details about module gene expression profiling |