CFinderADM002175's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Legionellosis | 2.02E-05 | KEGG pathway |
| protein lipoylation | 7.08E-05 | GO:0009249 |
| ribonuclease P activity | 0.000111611 | GO:0004526 |
| tRNA processing | 0.000287691 | GO:0008033 |
| glutathione transferase activity | 0.000415479 | GO:0004364 |
| translation elongation factor activity | 0.000415479 | GO:0003746 |
| RNA phosphodiester bond hydrolysis, endonucleolytic | 0.000442931 | GO:0090502 |
| translational elongation | 0.000442931 | GO:0006414 |
| glutathione metabolic process | 0.000549442 | GO:0006749 |
| RNA transport | 0.0036608 | KEGG pathway |
| vacuole | 0.007119879 | GO:0005773 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002326 | AT1G02930 (2.00E-09) | ATGST1|ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1; ATGSTF3|GLUATIONE S-TRANSFERASE F3; ATGSTF6|GLUTATHIONE S-TRANSFERASE; ERD11|EARLY RESPONSIVE TO DEHYDRATION 11; GST1|GLUTATHIONE S-TRANSFERASE 1; GSTF6|glutathione S-transferase 6 |
| CRO_T002384 | AT4G30350 (0) | SMXL2|SMAX1-like 2 |
| CRO_T004394 | AT1G04635 (6.00E-56) | EMB1687|EMBRYO DEFECTIVE 1687; POP5|A. thaliana homolog of yeast POP5 |
| CRO_T025122 | AT2G34920 (0.0000001) | EDA18|embryo sac development arrest 18 |
| CRO_T028630 | AT2G42040 (1.00E-17) | |
| CRO_T031939 | AT5G10550 (2.00E-74) | GTE2|global transcription factor group E2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000735 | cytokinin metabolic process cytokinin dehydrogenase activity Zeatin biosynthesis oxidoreductase activity, acting on CH-OH group of donors flavin adenine dinucleotide binding CST complex riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity Riboflavin metabolism riboflavin biosynthetic process cytokinins degradation flavin biosynthesis I (bacteria and plants) Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family cation binding single-stranded DNA binding phosphoprotein phosphatase activity oxidation-reduction process chloroplast stroma transferase activity | details |
| CFinderADM000933 | chloroplast stroma riboflavin synthase complex phosphoribosylglycinamide formyltransferase activity 6,7-dimethyl-8-ribityllumazine synthase activity 5-aminoimidazole ribonucleotide biosynthesis I tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate pyruvate dehydrogenase (acetyl-transferring) activity acetyl-CoA biosynthetic process from pyruvate folic acid-containing compound biosynthetic process riboflavin biosynthetic process 'de novo' IMP biosynthetic process flavin biosynthesis I (bacteria and plants) tetrahydrofolate biosynthesis II Folate biosynthesis Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc amino acid binding unfolded protein binding response to stress ligase activity protein folding chloroplast thylakoid membrane cell wall Purine metabolism Protein processing in endoplasmic reticulum Carbon metabolism | details |
| CFinderADM001741 | cytoskeleton organization Transcription_related, Transcription factor: ERF microtubule binding endomembrane system vacuole endoplasmic reticulum membrane transport Golgi apparatus transcription, DNA-templated heme binding transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated integral component of membrane | details |
| CFinderADM002174 | nuclear-transcribed mRNA catabolic process riboflavin synthase complex 6,7-dimethyl-8-ribityllumazine synthase activity plastoquinol-9 biosynthesis I Riboflavin metabolism flavin biosynthesis I (bacteria and plants) riboflavin biosynthetic process large ribosomal subunit rRNA binding cytoplasmic translation ribosomal large subunit assembly rRNA processing preribosome, large subunit precursor unfolded protein binding protein folding cytosolic large ribosomal subunit nucleolus chloroplast envelope chloroplast stroma transferase activity structural constituent of ribosome | details |
| CFinderADM002269 | CURI complex UTP-C complex tRNA export from nucleus regulation of circadian rhythm Legionellosis protein lipoylation Transcription_related, Transcription factor: HSF ribonuclease P activity tRNA processing spliceosomal complex vegetative to reproductive phase transition of meristem glutathione transferase activity translation elongation factor activity RNA phosphodiester bond hydrolysis, endonucleolytic translational elongation positive regulation of transcription, DNA-templated glutathione metabolic process rRNA processing mRNA splicing, via spliceosome small-subunit processome Ribosome biogenesis in eukaryotes vacuole nucleolus RNA transport Spliceosome DNA binding | details |
| CFinderADM002305 | recognition of pollen Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) carbohydrate binding Ubiquitin_Proteasome_system, E3 adaptor: DWD adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 protein phosphorylation protein serine/threonine kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |