CFinderADM002178's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| coumarin biosynthesis (via 2-coumarate) | 1.33E-05 | plantCyc |
| Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX | 5.95E-05 | kinase family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.000305781 | cazy family |
| glycosyl compound metabolic process | 0.000722323 | GO:1901657 |
| beta-glucosidase activity | 0.001224377 | GO:0008422 |
| response to stress | 0.002818105 | GO:0006950 |
| MAPK signaling pathway - plant | 0.005634903 | KEGG pathway |
| Starch and sucrose metabolism | 0.005634903 | KEGG pathway |
| carbohydrate metabolic process | 0.024766941 | GO:0005975 |
| protein kinase activity | 0.031666318 | GO:0004672 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003937 | AT5G02710 (3.00E-08) | unknown protein |
| CRO_T007639 | - | - |
| CRO_T008368 | AT1G21326 (1.00E-10) | VQ motif-containing protein |
| CRO_T009942 | AT4G21760 (2.00E-134) | BGLU47|beta-glucosidase 47 |
| CRO_T018166 | AT3G57120 (2.00E-103) | Protein kinase superfamily protein |
| CRO_T018535 | AT5G48040 (1.00E-123) | Ubiquitin carboxyl-terminal hydrolase family protein |
| CRO_T032571 | AT5G22350 (2.00E-59) | ELM1|ELONGATED MITOCHONDRIA 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001177 | micropyle coumarin biosynthesis (via 2-coumarate) pyrethrin I biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I Arp2/3 protein complex Arp2/3 complex-mediated actin nucleation seed germination glycosyl compound metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc protein autophosphorylation beta-glucosidase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII hydrolase activity, acting on ester bonds Endocytosis Starch and sucrose metabolism response to oxidative stress carbohydrate metabolic process phosphorylation | details |
| CFinderADM001306 | Circadian rhythm DNA (6-4) photolyase activity response to UV photoreactive repair deoxyribodipyrimidine photo-lyase activity UV protection Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX salicylate glucosides biosynthesis II transmembrane transport organophosphate ester transport organic phosphonate transport ABC transporters organic phosphonate transmembrane-transporting ATPase activity ATP binding quercetin glucoside biosynthesis (Allium) aerobic respiration I (cytochrome c) quercetin gentiotetraside biosynthesis DNA repair ATPase activity, coupled to transmembrane movement of substances protein ubiquitination ubiquitin-protein transferase activity protein kinase activity nucleus | details |
| CFinderADM001565 | borate uptake transmembrane transporter activity arsenite transmembrane transporter activity lateral plasma membrane response to boron-containing substance arsenite transport borate transmembrane transport response to arsenic-containing substance actin filament depolymerization xylan biosynthetic process actin cytoskeleton Regulation of actin cytoskeleton glycerol transport cellular water homeostasis water transport glycerol channel activity water channel activity actin binding integral component of plasma membrane | details |
| CFinderADM001766 | polygalacturonate 4-alpha-galacturonosyltransferase activity homogalacturonan biosynthesis pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Amino sugar and nucleotide sugar metabolism Golgi membrane cell wall organization mitochondrial respiratory chain complex IV assembly Transcription_related, Transcription factor: HSF embryo development ending in seed dormancy copper ion binding trans-Golgi network endosome | details |
| CFinderADM002177 | Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX cellular protein localization Fanconi anemia pathway cellular transition metal ion homeostasis response to salt stress metal ion transport transition metal ion binding signal transduction MAPK signaling pathway - plant protein kinase activity protein phosphorylation | details |
| CFinderADM002268 | coumarin biosynthesis (via 2-coumarate) Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase glycosyl compound metabolic process acetylglucosaminyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-glucosidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism carbohydrate metabolic process protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM002279 | coumarin biosynthesis (via 2-coumarate) carbohydrate metabolic process regulation of meristem growth floral organ development glycosyl compound metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 beta-glucosidase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Starch and sucrose metabolism anchored component of plasma membrane polysaccharide binding hydrolase activity, hydrolyzing O-glycosyl compounds protein kinase activity integral component of membrane oxidoreductase activity protein phosphorylation | details |
| CFinderADM002301 | floral organ development regulation of meristem growth Base excision repair nuclease activity protein serine/threonine phosphatase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII cellular process protein dephosphorylation Ubiquitin_Proteasome_system, E3: RING integral component of membrane protein kinase activity oxidoreductase activity protein phosphorylation | details |
| CFinderADM002306 | response to stress | details |
Expression profiles
 Show details about module gene expression profiling |