CFinderADM002279's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| coumarin biosynthesis (via 2-coumarate) | 6.60E-06 | plantCyc |
| carbohydrate metabolic process | 2.16E-05 | GO:0005975 |
| regulation of meristem growth | 2.19E-05 | GO:0010075 |
| floral organ development | 2.73E-05 | GO:0048437 |
| glycosyl compound metabolic process | 0.000153204 | GO:1901657 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.000791051 | cazy family |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.000803013 | cazy family |
| beta-glucosidase activity | 0.001537887 | GO:0008422 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.002000193 | kinase family |
| Starch and sucrose metabolism | 0.002027532 | KEGG pathway |
| anchored component of plasma membrane | 0.002044494 | GO:0046658 |
| polysaccharide binding | 0.002741363 | GO:0030247 |
| hydrolase activity, hydrolyzing O-glycosyl compounds | 0.006391637 | GO:0004553 |
| protein kinase activity | 0.02021317 | GO:0004672 |
| integral component of membrane | 0.025008592 | GO:0016021 |
| oxidoreductase activity | 0.029296249 | GO:0016491 |
| protein phosphorylation | 0.038230409 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000718 | AT1G32860 (6.00E-94) | Glycosyl hydrolase superfamily protein |
| CRO_T003937 | AT5G02710 (3.00E-08) | unknown protein |
| CRO_T003945 | AT1G75820 (0) | CLV1|CLAVATA 1; FAS3|FASCIATA 3; FLO5|FLOWER DEVELOPMENT 5 |
| CRO_T009942 | AT4G21760 (2.00E-134) | BGLU47|beta-glucosidase 47 |
| CRO_T032571 | AT5G22350 (2.00E-59) | ELM1|ELONGATED MITOCHONDRIA 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001177 | micropyle coumarin biosynthesis (via 2-coumarate) pyrethrin I biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I Arp2/3 protein complex Arp2/3 complex-mediated actin nucleation seed germination glycosyl compound metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc protein autophosphorylation beta-glucosidase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII hydrolase activity, acting on ester bonds Endocytosis Starch and sucrose metabolism response to oxidative stress carbohydrate metabolic process phosphorylation | details |
| CFinderADM001443 | regulation of meristem growth lactate biosynthetic process cellular response to hydrogen peroxide floral organ development cytoskeleton organization methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) Ubiquitin_Proteasome_system, E3 adaptor: Cullin glyoxalase III activity Transcription_related, Transcription factor: C2C2-Dof transmembrane receptor protein tyrosine kinase activity glutamine metabolic process cullin-RING ubiquitin ligase complex phosphatidylcholine acyl editing phospholipases transcription coactivator activity unidimensional cell growth protein serine/threonine kinase activity ubiquitin protein ligase binding actin binding serine-type carboxypeptidase activity peptidyl-tyrosine phosphorylation protein ubiquitination involved in ubiquitin-dependent protein catabolic process regulation of transcription from RNA polymerase II promoter proteolysis involved in cellular protein catabolic process lipid metabolic process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII cytosol ubiquitin protein ligase activity Protein processing in endoplasmic reticulum vacuole | details |
| CFinderADM001515 | anchored component of plasma membrane salicylate glucosides biosynthesis II quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis RNA degradation signal transducer activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity polysaccharide binding signal transduction defense response flavonoid glucuronidation flavonoid biosynthetic process hydrolase activity, hydrolyzing O-glycosyl compounds plasmodesma intracellular membrane-bounded organelle formation of glycosidic bonds, GlycosylTransferases: GTnc carbohydrate metabolic process integral component of membrane | details |
| CFinderADM001565 | borate uptake transmembrane transporter activity arsenite transmembrane transporter activity lateral plasma membrane response to boron-containing substance arsenite transport borate transmembrane transport response to arsenic-containing substance actin filament depolymerization xylan biosynthetic process actin cytoskeleton Regulation of actin cytoskeleton glycerol transport cellular water homeostasis water transport glycerol channel activity water channel activity actin binding integral component of plasma membrane | details |
| CFinderADM001661 | regulation of meristem growth cellular response to hydrogen peroxide lactate biosynthetic process floral organ development glyoxalase III activity methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) glutamine metabolic process transcription coactivator activity regulation of transcription from RNA polymerase II promoter Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 transferase activity protein kinase activity oxidoreductase activity protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001766 | polygalacturonate 4-alpha-galacturonosyltransferase activity homogalacturonan biosynthesis pectin biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc Amino sugar and nucleotide sugar metabolism Golgi membrane cell wall organization mitochondrial respiratory chain complex IV assembly Transcription_related, Transcription factor: HSF embryo development ending in seed dormancy copper ion binding trans-Golgi network endosome | details |
| CFinderADM002025 | Transcription_related, Transcription factor: C2C2-Dof regulation of meristem growth floral organ development Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein kinase activity oxidoreductase activity protein phosphorylation | details |
| CFinderADM002178 | coumarin biosynthesis (via 2-coumarate) Protein_kinases_phosphatases, PPC:1.6.1: Leucine Rich Repeat Kinase IX hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycosyl compound metabolic process beta-glucosidase activity response to stress MAPK signaling pathway - plant Starch and sucrose metabolism carbohydrate metabolic process protein kinase activity | details |
| CFinderADM002268 | coumarin biosynthesis (via 2-coumarate) Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase glycosyl compound metabolic process acetylglucosaminyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-glucosidase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Starch and sucrose metabolism carbohydrate metabolic process protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM002301 | floral organ development regulation of meristem growth Base excision repair nuclease activity protein serine/threonine phosphatase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII cellular process protein dephosphorylation Ubiquitin_Proteasome_system, E3: RING integral component of membrane protein kinase activity oxidoreductase activity protein phosphorylation | details |
| CFinderADM002306 | response to stress | details |
Expression profiles
 Show details about module gene expression profiling |