CFinderADM002181's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| organic acid transmembrane transporter activity | 1.73E-05 | GO:0005342 |
| organic acid transmembrane transport | 2.68E-05 | GO:1903825 |
| regulation of vesicle targeting, to, from or within Golgi | 2.68E-05 | GO:0048209 |
| Golgi medial cisterna | 4.25E-05 | GO:0005797 |
| cis-Golgi network | 5.95E-05 | GO:0005801 |
| ribosomal large subunit biogenesis | 0.000182018 | GO:0042273 |
| intra-Golgi vesicle-mediated transport | 0.000187283 | GO:0006891 |
| SNAP receptor activity | 0.000298614 | GO:0005484 |
| SNARE binding | 0.000298614 | GO:0000149 |
| vesicle fusion | 0.000375995 | GO:0006906 |
| preribosome, large subunit precursor | 0.000458849 | GO:0030687 |
| ER to Golgi vesicle-mediated transport | 0.000462362 | GO:0006888 |
| SNARE interactions in vesicular transport | 0.00048253 | KEGG pathway |
| protein transport | 0.000646693 | GO:0015031 |
| SNARE complex | 0.000824107 | GO:0031201 |
| Golgi membrane | 0.00175118 | GO:0000139 |
| Spliceosome | 0.004528353 | KEGG pathway |
| nucleolus | 0.00456701 | GO:0005730 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.004683771 | ubs family |
| integral component of plasma membrane | 0.005956356 | GO:0005887 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004395 | - | - |
| CRO_T007901 | AT1G15880 (3.00E-20) | GOS11|golgi snare 11 |
| CRO_T014061 | AT1G29320 (4.00E-128) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T022538 | AT1G78560 (5.00E-55) | Sodium Bile acid symporter family |
| CRO_T023722 | AT2G40600 (4.00E-38) | appr-1-p processing enzyme family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001182 | proteasome regulatory particle, lid subcomplex nuclear cap binding complex Golgi medial cisterna RNA cap binding cis-Golgi network organic acid transmembrane transporter activity S-methyl-5-thioribose-1-phosphate isomerase activity guanyl-nucleotide exchange factor activity eukaryotic translation initiation factor 2B complex positive regulation of circadian rhythm response to far red light regulation of vesicle targeting, to, from or within Golgi proteasome assembly organic acid transmembrane transport mRNA cis splicing, via spliceosome Circadian rhythm L-methionine biosynthetic process from methylthioadenosine red, far-red light phototransduction structural molecule activity intra-Golgi vesicle-mediated transport regulation of translational initiation vesicle fusion ER to Golgi vesicle-mediated transport SNAP receptor activity SNARE binding Transcription_related, Transcription factor: FAR1 positive regulation of GTPase activity positive regulation of transcription, DNA-templated SNARE complex protein transport translational initiation Proteasome SNARE interactions in vesicular transport ubiquitin-dependent protein catabolic process Golgi membrane translation initiation factor activity nucleus integral component of plasma membrane RNA transport Spliceosome transcription factor activity, sequence-specific DNA binding nucleotide binding | details |
| CFinderADM001368 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase soluble NSF attachment protein activity syntaxin binding membrane fusion SNARE complex Spliceosome vacuolar membrane intracellular protein transport Ubiquitin_Proteasome_system, E3: RING protein phosphorylation protein serine/threonine kinase activity cytoplasm | details |
| CFinderADM001636 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity negative regulation of reductive pentose-phosphate cycle phosphatidylethanolamine biosynthesis I tubulin complex assembly Ran GTPase binding RNA splicing protein complex gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt single-organism cellular process intracellular protein transport protein folding RNA transport Spliceosome Ubiquitin_Proteasome_system, E3 adaptor: DWD metabolic process | details |
| CFinderADM001678 | solute:cation symporter activity guanine transmembrane transporter activity adenine transmembrane transporter activity uracil transmembrane transporter activity hypoxanthine transport uracil import across plasma membrane adenine import across plasma membrane guanine import across plasma membrane cation transmembrane transport ribosomal large subunit biogenesis Necroptosis peptidyl-prolyl cis-trans isomerase activity preribosome, large subunit precursor cellular process MAPK signaling pathway - plant Ubiquitin_Proteasome_system, E3 adaptor: DWD nucleolus plasmodesma | details |
| CFinderADM002070 | organic acid transmembrane transport organic acid transmembrane transporter activity translational elongation nucleotidyltransferase activity translation elongation factor activity intracellular signal transduction RNA transport GTPase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD GTP binding integral component of plasma membrane intracellular | details |
Expression profiles
 Show details about module gene expression profiling |