CFinderADM002188's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| rRNA modification | 2.56E-05 | GO:0000154 |
| malate transmembrane transport | 3.75E-05 | GO:0071423 |
| cytoskeleton organization | 3.75E-05 | GO:0007010 |
| box C/D snoRNP complex | 6.44E-05 | GO:0031428 |
| malate transmembrane transporter activity | 0.000109453 | GO:0015140 |
| snoRNA binding | 0.000109453 | GO:0030515 |
| unidimensional cell growth | 0.000185033 | GO:0009826 |
| actin binding | 0.00026922 | GO:0003779 |
| Ribosome biogenesis in eukaryotes | 0.000850507 | KEGG pathway |
| plant-type vacuole membrane | 0.00123552 | GO:0009705 |
| small-subunit processome | 0.001301252 | GO:0032040 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.004683771 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006154 | AT3G60380 (5.00E-17) | unknown protein |
| CRO_T006290 | AT1G25480 (7.00E-153) | Aluminium activated malate transporter family protein |
| CRO_T009096 | AT4G34490 (9.00E-173) | ATCAP1|cyclase associated protein 1 |
| CRO_T028872 | AT1G73720 (1.00E-12) | SMU1|SUPPRESSORS OF MEC-8 AND UNC-52 1 |
| CRO_T033258 | AT3G05060 (0) | NOP56-like pre RNA processing ribonucleoprotein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000848 | metabolic process rRNA modification box C/D snoRNP complex benzoate biosynthesis I (CoA-dependent, β-oxidative) Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) snoRNA binding small-subunit processome Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: ERF MAPK signaling pathway - plant Ribosome biogenesis in eukaryotes Plant hormone signal transduction hydrolase activity, hydrolyzing O-glycosyl compounds protein phosphorylation binding hydrolase activity protein serine/threonine kinase activity | details |
| CFinderADM001443 | regulation of meristem growth lactate biosynthetic process cellular response to hydrogen peroxide floral organ development cytoskeleton organization methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) Ubiquitin_Proteasome_system, E3 adaptor: Cullin glyoxalase III activity Transcription_related, Transcription factor: C2C2-Dof transmembrane receptor protein tyrosine kinase activity glutamine metabolic process cullin-RING ubiquitin ligase complex phosphatidylcholine acyl editing phospholipases transcription coactivator activity unidimensional cell growth protein serine/threonine kinase activity ubiquitin protein ligase binding actin binding serine-type carboxypeptidase activity peptidyl-tyrosine phosphorylation protein ubiquitination involved in ubiquitin-dependent protein catabolic process regulation of transcription from RNA polymerase II promoter proteolysis involved in cellular protein catabolic process lipid metabolic process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII cytosol ubiquitin protein ligase activity Protein processing in endoplasmic reticulum vacuole | details |
| CFinderADM002171 | Transcription_related, Transcription factor: CAMTA oligopeptide transport RNA degradation Ubiquitin_Proteasome_system, E3 adaptor: DWD transporter activity DNA binding | details |
Expression profiles
 Show details about module gene expression profiling |