CFinderADM001443's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of meristem growth | 0.000288145 | GO:0010075 |
| lactate biosynthetic process | 0.000288145 | GO:0019249 |
| cellular response to hydrogen peroxide | 0.000288145 | GO:0070301 |
| floral organ development | 0.000403054 | GO:0048437 |
| cytoskeleton organization | 0.000431469 | GO:0007010 |
| methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione | 0.000431469 | GO:0019243 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.000468202 | cazy family |
| Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X | 0.000468202 | kinase family |
| Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) | 0.000468202 | kinase family |
| Ubiquitin_Proteasome_system, E3 adaptor: Cullin | 0.000468202 | ubs family |
| glyoxalase III activity | 0.000482087 | GO:0019172 |
| Transcription_related, Transcription factor: C2C2-Dof | 0.001065551 | TF family |
| transmembrane receptor protein tyrosine kinase activity | 0.001082348 | GO:0004714 |
| glutamine metabolic process | 0.001399889 | GO:0006541 |
| cullin-RING ubiquitin ligase complex | 0.001712182 | GO:0031461 |
| phosphatidylcholine acyl editing | 0.002127692 | plantCyc |
| phospholipases | 0.002127692 | plantCyc |
| transcription coactivator activity | 0.002174128 | GO:0003713 |
| unidimensional cell growth | 0.003101173 | GO:0009826 |
| protein serine/threonine kinase activity | 0.004615291 | GO:0004674 |
| ubiquitin protein ligase binding | 0.004772825 | GO:0031625 |
| actin binding | 0.004772825 | GO:0003779 |
| serine-type carboxypeptidase activity | 0.004772825 | GO:0004185 |
| peptidyl-tyrosine phosphorylation | 0.005958588 | GO:0018108 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.006296663 | GO:0042787 |
| regulation of transcription from RNA polymerase II promoter | 0.006296663 | GO:0006357 |
| proteolysis involved in cellular protein catabolic process | 0.009737132 | GO:0051603 |
| lipid metabolic process | 0.011327437 | GO:0006629 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.013630959 | kinase family |
| cytosol | 0.020144091 | GO:0005829 |
| ubiquitin protein ligase activity | 0.022059018 | GO:0061630 |
| Protein processing in endoplasmic reticulum | 0.031135445 | KEGG pathway |
| vacuole | 0.035719504 | GO:0005773 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000954 | AT4G33430 (1.00E-136) | ATSERK3|SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3; BAK1|BRI1-associated receptor kinase; ELG|ELONGATED; RKS10|RECEPTOR KINASES LIKE SERK 10 |
| CRO_T003945 | AT1G75820 (0) | CLV1|CLAVATA 1; FAS3|FASCIATA 3; FLO5|FLOWER DEVELOPMENT 5 |
| CRO_T006273 | AT3G07990 (9.00E-120) | SCPL27|serine carboxypeptidase-like 27 |
| CRO_T009096 | AT4G34490 (9.00E-173) | ATCAP1|cyclase associated protein 1 |
| CRO_T009792 | AT4G02570 (5.00E-154) | ATCUL1|cullin 1; AXR6|AUXIN RESISTANT 6 |
| CRO_T022925 | AT3G55370 (3.00E-34) | OBP3|OBF-binding protein 3 |
| CRO_T023036 | AT2G42690 (2.00E-137) | alpha/beta-Hydrolases superfamily protein |
| CRO_T026663 | AT1G53280 (2.00E-41) | AtDJ1B|DJ-1 homolog B |
| CRO_T029955 | AT3G19770 (3.00E-19) | ATVPS9A|VACUOLAR PROTEIN SORTING 9A |
| CRO_T030840 | AT1G56120 (0) | Leucine-rich repeat transmembrane protein kinase |
| CRO_T031318 | AT1G14780 (9.00E-71) | MAC/Perforin domain-containing protein |
| CRO_T033405 | AT1G23890 (1.00E-22) | NHL domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000829 | Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V cytosolic proteasome complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process activation of MAPKK activity peptidyl-tyrosine dephosphorylation Proteasome TBP-class protein binding proteasome-activating ATPase activity MAP kinase kinase kinase activity protein tyrosine phosphatase activity Transcription_related, Transcription factor: C2C2-GATA ATP binding MAPK cascade Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular part peptidase activity cellular process Golgi apparatus sequence-specific DNA binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular | details |
| CFinderADM000968 | cellular response to gravity tubulin complex Phagosome response to cadmium ion cell surface receptor signaling pathway microtubule-based process structural constituent of cytoskeleton plasma membrane microtubule apoplast GTPase activity cAMP-dependent protein kinase activity cell wall GTP binding plasmodesma Insulin signaling pathway Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase exocyst cell wall organization or biogenesis exocytosis protein phosphorylation glycolysis I (from glucose 6-phosphate) O-acetyltransferase activity cytosol polysaccharide binding protein dimerization activity Golgi apparatus adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | details |
| CFinderADM001019 | protein catabolic process aspartic-type endopeptidase activity proteolysis cellulose synthase (UDP-forming) activity cellulose biosynthetic process RNA degradation cell wall organization Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| CFinderADM001048 | determination of dorsal/ventral asymmetry protein acetyltransferase complex Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family N-terminal protein amino acid acetylation Transcription_related, Transcription factor: MYB-related flower development peptide alpha-N-acetyltransferase activity phosphatidylcholine acyl editing phospholipases lipid metabolic process hydrolase activity protein serine/threonine kinase activity protein phosphorylation plasma membrane | details |
| CFinderADM001109 | pectin biosynthetic process polygalacturonate 4-alpha-galacturonosyltransferase activity Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family formation of glycosidic bonds, GlycosylTransferases: GTnc homogalacturonan biosynthesis phosphatidylcholine acyl editing phospholipases Amino sugar and nucleotide sugar metabolism lipid metabolic process cell wall organization trans-Golgi network endosome Golgi membrane hydrolase activity protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001505 | Transcription_related, Transcription factor: C2H2 | details |
| CFinderADM001661 | regulation of meristem growth cellular response to hydrogen peroxide lactate biosynthetic process floral organ development glyoxalase III activity methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) glutamine metabolic process transcription coactivator activity regulation of transcription from RNA polymerase II promoter Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 transferase activity protein kinase activity oxidoreductase activity protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001789 | determination of dorsal/ventral asymmetry protein serine/threonine kinase activity protein phosphorylation flower development phosphatidylcholine acyl editing phospholipases Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family plasma membrane Transcription_related, Transcription factor: MYB-related lipid metabolic process Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII endosome trans-Golgi network ATP binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolase activity integral component of membrane | details |
| CFinderADM001950 | glyoxalase III activity fatty-acyl-CoA synthase activity cellular response to hydrogen peroxide lactate biosynthetic process oxidoreductase activity jasmonic acid biosynthetic process methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Transcription_related, Transcription factor: C2C2-Dof transcription coactivator activity glutamine metabolic process jasmonic acid biosynthesis single-organism metabolic process regulation of transcription from RNA polymerase II promoter Peroxisome transferase activity | details |
| CFinderADM002025 | Transcription_related, Transcription factor: C2C2-Dof regulation of meristem growth floral organ development Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein kinase activity oxidoreductase activity protein phosphorylation | details |
| CFinderADM002188 | rRNA modification malate transmembrane transport cytoskeleton organization box C/D snoRNP complex malate transmembrane transporter activity snoRNA binding unidimensional cell growth actin binding Ribosome biogenesis in eukaryotes plant-type vacuole membrane small-subunit processome Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| CFinderADM002235 | regulation of cell cycle Transcription_related, Transcription regulator: LIM Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase cyclin-dependent protein serine/threonine kinase activity plasma membrane calcium-dependent phospholipid binding RNA degradation carbohydrate binding transferase activity, transferring glycosyl groups adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 calcium ion binding integral component of membrane protein phosphorylation | details |
| CFinderADM002278 | L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity calcium-dependent phospholipid binding cellulose synthase (UDP-forming) activity zinc ion binding plasma membrane Transcription_related, Transcription factor: C3H cellulose biosynthetic process transferase activity, transferring glycosyl groups flavin adenine dinucleotide binding cell wall organization calcium ion binding Ubiquitin_Proteasome_system, E3: RING integral component of membrane | details |
| CFinderADM002279 | coumarin biosynthesis (via 2-coumarate) carbohydrate metabolic process regulation of meristem growth floral organ development glycosyl compound metabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 beta-glucosidase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Starch and sucrose metabolism anchored component of plasma membrane polysaccharide binding hydrolase activity, hydrolyzing O-glycosyl compounds protein kinase activity integral component of membrane oxidoreductase activity protein phosphorylation | details |
| CFinderADM002301 | floral organ development regulation of meristem growth Base excision repair nuclease activity protein serine/threonine phosphatase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII cellular process protein dephosphorylation Ubiquitin_Proteasome_system, E3: RING integral component of membrane protein kinase activity oxidoreductase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |