CFinderADM002191's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Carbon metabolism | 7.08E-06 | KEGG pathway |
| phosphoglycerate mutase activity | 2.68E-05 | GO:0004619 |
| photoreceptor activity | 2.68E-05 | GO:0009881 |
| pyruvate dehydrogenase (acetyl-transferring) activity | 3.22E-05 | GO:0004739 |
| dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 3.22E-05 | GO:0004579 |
| glucose catabolic process | 3.71E-05 | GO:0006007 |
| entrainment of circadian clock | 3.71E-05 | GO:0009649 |
| acetyl-CoA biosynthetic process from pyruvate | 4.61E-05 | GO:0006086 |
| protein N-linked glycosylation via asparagine | 6.79E-05 | GO:0018279 |
| response to UV-B | 0.000103629 | GO:0010224 |
| chromatin | 0.000155309 | GO:0000785 |
| oligosaccharyltransferase complex | 0.000155309 | GO:0008250 |
| manganese ion binding | 0.00026939 | GO:0030145 |
| pyruvate decarboxylation to acetyl CoA | 0.00027565 | plantCyc |
| N-Glycan biosynthesis | 0.000447679 | KEGG pathway |
| chromatin binding | 0.000485996 | GO:0003682 |
| glycolytic process | 0.000576093 | GO:0006096 |
| gluconeogenesis I | 0.000653498 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.000653498 | plantCyc |
| glycolysis IV (plant cytosol) | 0.000653498 | plantCyc |
| Rubisco shunt | 0.000653498 | plantCyc |
| protein homodimerization activity | 0.001020442 | GO:0042803 |
| signal transduction | 0.002204968 | GO:0007165 |
| plant-type cell wall | 0.006958681 | GO:0009505 |
| transport | 0.007743503 | GO:0006810 |
| endoplasmic reticulum membrane | 0.007796475 | GO:0005789 |
| vacuolar membrane | 0.007796475 | GO:0005774 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011085 | AT5G42140 (5.00E-20) | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T016761 | AT5G50850 (0) | MAB1|MACCI-BOU |
| CRO_T018711 | AT1G14010 (2.00E-73) | emp24/gp25L/p24 family/GOLD family protein |
| CRO_T028033 | AT1G09780 (0) | iPGAM1|2,3-biphosphoglycerate-independent phosphoglycerate mutase 1 |
| CRO_T030151 | AT2G01720 (3.00E-174) | Ribophorin I |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001086 | dolichyl-diphosphooligosaccharide-protein glycotransferase activity histone H4-K5 acetylation regulation of histone H4 acetylation regulation of timing of transition from vegetative to reproductive phase protein N-linked glycosylation via asparagine oligosaccharyltransferase complex NuA4 histone acetyltransferase complex regulation of flower development mRNA splicing, via spliceosome catalytic step 2 spliceosome N-Glycan biosynthesis Transcription_related, Transcription factor: NAC plant-type cell wall Spliceosome vacuolar membrane Ubiquitin_Proteasome_system, E3 adaptor: DWD regulation of transcription, DNA-templated | details |
| CFinderADM001377 | Carbon metabolism isocitrate dehydrogenase (NAD+) activity phosphoglycerate mutase activity protein processing involved in protein targeting to mitochondrion glucose catabolic process acetyl-CoA biosynthetic process from pyruvate pyruvate dehydrogenase (acetyl-transferring) activity ubiquinol-cytochrome-c reductase activity L-leucine biosynthesis pyruvate decarboxylation to acetyl CoA L-glutamine biosynthesis III TCA cycle II (plants and fungi) manganese ion binding tricarboxylic acid cycle glycolytic process Rubisco shunt glycolysis IV (plant cytosol) metalloendopeptidase activity gluconeogenesis I glycolysis I (from glucose 6-phosphate) respiratory chain hydrogen ion transmembrane transport NAD binding oxidation-reduction process mitochondrial inner membrane magnesium ion binding mitochondrion | details |
| CFinderADM002192 | cytosol inosine catabolic process inosine nucleosidase activity photoreceptor activity glucose-6-phosphate isomerase activity entrainment of circadian clock defense response to fungus, incompatible interaction chromatin gluconeogenesis pyrimidine ribonucleosides salvage II response to UV-B Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) adenine and adenosine salvage II GDP-mannose biosynthesis guanosine nucleotides degradation I transferase activity, transferring alkyl or aryl (other than methyl) groups sucrose degradation III (sucrose invertase) pyrimidine salvage pathway starch biosynthesis sucrose biosynthesis II adenosine nucleotides degradation I sucrose biosynthesis I (from photosynthesis) UDP-glucosyltransferase activity glycolytic process chromatin binding gluconeogenesis I glycolysis I (from glucose 6-phosphate) nucleus protein homodimerization activity Terpenoid backbone biosynthesis signal transduction intracellular signal transduction MAPK signaling pathway - plant Carbon metabolism protein serine/threonine kinase activity protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |