CFinderADM002192's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosol | 1.65E-07 | GO:0005829 |
| inosine catabolic process | 1.48E-05 | GO:0006148 |
| inosine nucleosidase activity | 1.48E-05 | GO:0047724 |
| photoreceptor activity | 2.47E-05 | GO:0009881 |
| glucose-6-phosphate isomerase activity | 2.47E-05 | GO:0004347 |
| entrainment of circadian clock | 3.71E-05 | GO:0009649 |
| defense response to fungus, incompatible interaction | 5.93E-05 | GO:0009817 |
| chromatin | 6.32E-05 | GO:0000785 |
| gluconeogenesis | 6.79E-05 | GO:0006094 |
| pyrimidine ribonucleosides salvage II | 7.12E-05 | plantCyc |
| response to UV-B | 0.000103629 | GO:0010224 |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.000109146 | kinase family |
| adenine and adenosine salvage II | 0.000128071 | plantCyc |
| GDP-mannose biosynthesis | 0.000138657 | plantCyc |
| guanosine nucleotides degradation I | 0.000138657 | plantCyc |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.000148019 | GO:0016765 |
| sucrose degradation III (sucrose invertase) | 0.000149275 | plantCyc |
| pyrimidine salvage pathway | 0.000161072 | plantCyc |
| starch biosynthesis | 0.000256592 | plantCyc |
| sucrose biosynthesis II | 0.000288276 | plantCyc |
| adenosine nucleotides degradation I | 0.000319959 | plantCyc |
| sucrose biosynthesis I (from photosynthesis) | 0.000329706 | plantCyc |
| UDP-glucosyltransferase activity | 0.000372302 | GO:0035251 |
| glycolytic process | 0.000576093 | GO:0006096 |
| chromatin binding | 0.000671655 | GO:0003682 |
| gluconeogenesis I | 0.00081926 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.000842475 | plantCyc |
| nucleus | 0.001293521 | GO:0005634 |
| protein homodimerization activity | 0.001410266 | GO:0042803 |
| Terpenoid backbone biosynthesis | 0.001579411 | KEGG pathway |
| signal transduction | 0.002170144 | GO:0007165 |
| intracellular signal transduction | 0.002170144 | GO:0035556 |
| MAPK signaling pathway - plant | 0.003466813 | KEGG pathway |
| Carbon metabolism | 0.013603014 | KEGG pathway |
| protein serine/threonine kinase activity | 0.02737649 | GO:0004674 |
| protein phosphorylation | 0.038752596 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008966 | AT4G33950 (1.00E-93) | ATOST1|OPEN STOMATA 1; SNRK2-6|SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6; SNRK2.6|SNF1-RELATED PROTEIN KINASE 2.6 |
| CRO_T011085 | AT5G42140 (5.00E-20) | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
| CRO_T018783 | AT2G17570 (7.00E-87) | cPT1|cis-prenyltransferase 1 |
| CRO_T028488 | AT1G05620 (2.00E-128) | NSH2|nucleoside hydrolase 2; URH2|uridine-ribohydrolase 2 |
| CRO_T030357 | AT5G42740 (0) | Sugar isomerase (SIS) family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000855 | spermidine biosynthesis I putrescine N-methyltransferase activity spermidine synthase activity hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity regulation of cyclin-dependent protein serine/threonine kinase activity spermidine biosynthetic process protein kinase binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) proton transport Cysteine and methionine metabolism Plant-pathogen interaction MAPK signaling pathway - plant intracellular signal transduction vacuolar membrane methylation Oxidative phosphorylation transmembrane transport protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001228 | hydrogen-translocating pyrophosphatase activity inorganic diphosphatase activity Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase protein kinase binding regulation of cyclin-dependent protein serine/threonine kinase activity Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription factor: G2-like proton transport intracellular signal transduction MAPK signaling pathway - plant vacuolar membrane Oxidative phosphorylation transmembrane transport protein serine/threonine kinase activity protein phosphorylation | details |
| CFinderADM001700 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Transcription_related, Transcription factor: NF-X1 positive regulation of long-day photoperiodism, flowering negative regulation of transcription from RNA polymerase II promoter temperature compensation of the circadian clock response to far red light response to blue light Circadian rhythm response to hydrogen peroxide Autophagy - animal Circadian rhythm - plant NOD-like receptor signaling pathway response to cold RNA polymerase II regulatory region sequence-specific DNA binding transcription from RNA polymerase II promoter nucleoplasm Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) nucleus MAPK signaling pathway - plant defense response intracellular signal transduction Ubiquitin_Proteasome_system, E3 adaptor: DWD Ubiquitin_Proteasome_system, E3 adaptor: F-box formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| CFinderADM001853 | Carbon metabolism Vitamin B6 metabolism Transcription_related, Transcription regulator: LIM fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate choline biosynthesis I Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) 6-phosphofructokinase activity cytoplasm glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) phosphatase activity FMN binding MAPK signaling pathway - plant dephosphorylation intracellular signal transduction ATP binding oxidoreductase activity | details |
| CFinderADM001948 | BRCA1-A complex BRISC complex phosphopantothenate biosynthesis I Transcription_related, Transcription factor: NF-X1 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity pantothenate kinase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity Peptidoglycan biosynthesis positive regulation of DNA repair negative regulation of transcription from RNA polymerase II promoter coenzyme A biosynthetic process Pantothenate and CoA biosynthesis NOD-like receptor signaling pathway RNA polymerase II regulatory region sequence-specific DNA binding Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) transcription from RNA polymerase II promoter single-organism cellular process Homologous recombination nucleus MAPK signaling pathway - plant defense response intracellular signal transduction formation of glycosidic bonds, GlycosylTransferases: GTnc ATP binding phosphorylation | details |
| CFinderADM002045 | Hsp70 protein binding glucose-6-phosphate isomerase activity heat acclimation protein oligomerization defense response to fungus, incompatible interaction gluconeogenesis oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor GDP-mannose biosynthesis sucrose degradation III (sucrose invertase) starch biosynthesis sucrose biosynthesis II cellular response to oxidative stress sulfate assimilation sucrose biosynthesis I (from photosynthesis) protein disulfide oxidoreductase activity glycolytic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) cell redox homeostasis protein folding Ubiquitin_Proteasome_system, E3 adaptor: DWD RNA transport Carbon metabolism | details |
| CFinderADM002191 | Carbon metabolism phosphoglycerate mutase activity photoreceptor activity pyruvate dehydrogenase (acetyl-transferring) activity dolichyl-diphosphooligosaccharide-protein glycotransferase activity glucose catabolic process entrainment of circadian clock acetyl-CoA biosynthetic process from pyruvate protein N-linked glycosylation via asparagine response to UV-B chromatin oligosaccharyltransferase complex manganese ion binding pyruvate decarboxylation to acetyl CoA N-Glycan biosynthesis chromatin binding glycolytic process gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt protein homodimerization activity signal transduction plant-type cell wall transport endoplasmic reticulum membrane vacuolar membrane | details |
Expression profiles
 Show details about module gene expression profiling |