CFinderADM002199's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Adherens junction | 7.52E-06 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I | 2.02E-05 | kinase family |
| histone lysine methylation | 6.09E-05 | GO:0034968 |
| histone-lysine N-methyltransferase activity | 0.000154311 | GO:0018024 |
| plant sterol biosynthesis | 0.000170505 | plantCyc |
| Transcription_related, Transcription regulator: SET | 0.000300553 | TF family |
| chromosome | 0.000361232 | GO:0005694 |
| Lysine degradation | 0.000437678 | KEGG pathway |
| histone binding | 0.000493814 | GO:0042393 |
| Steroid biosynthesis | 0.000552555 | KEGG pathway |
| NF-kappa B signaling pathway | 0.000671324 | KEGG pathway |
| lipid metabolic process | 0.002506342 | GO:0006629 |
| protein kinase activity | 0.027693961 | GO:0004672 |
| hydrolase activity | 0.03726544 | GO:0016787 |
| protein phosphorylation | 0.039919459 | GO:0006468 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000215 | AT5G22050 (4.00E-73) | Protein kinase superfamily protein |
| CRO_T013588 | AT1G73100 (4.00E-162) | SDG19|SET DOMAIN PROTEIN 19; SUVH3|SU(VAR)3-9 homolog 3 |
| CRO_T016756 | AT2G05260 (2.00E-36) | alpha/beta-Hydrolases superfamily protein |
| CRO_T021261 | AT5G57410 (2.00E-141) | Afadin/alpha-actinin-binding protein |
| CRO_T027911 | AT2G20515 (1.00E-36) | unknown protein |
| CRO_T029268 | AT5G50375 (3.00E-64) | CPI1|cyclopropyl isomerase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000434 | Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I NF-kappa B signaling pathway Ubiquitin_Proteasome_system, E2: UBC Ubiquitin mediated proteolysis transferase activity, transferring hexosyl groups peptidyl-prolyl cis-trans isomerase activity protein peptidyl-prolyl isomerization Ubiquitin_Proteasome_system, E3: U-box serine-type endopeptidase activity ubiquitin-protein transferase activity lipid metabolic process protein folding protein ubiquitination formation of glycosidic bonds, GlycosylTransferases: GTnc extracellular region cell wall ATP binding transport protein kinase activity | details |
| CFinderADM000824 | mitochondrial matrix Transcription_related, Transcription factor: bZIP CDP-diacylglycerol biosynthesis I plant sterol biosynthesis diacylglycerol and triacylglycerol biosynthesis iron-sulfur cluster assembly Steroid biosynthesis Glycerolipid metabolism translational initiation transferase activity, transferring acyl groups translation initiation factor activity Plant hormone signal transduction sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding metabolic process regulation of transcription, DNA-templated | details |
| CFinderADM000825 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination plant sterol biosynthesis iron-sulfur cluster assembly Ubiquitin_Proteasome_system, E2: UBC Steroid biosynthesis translational initiation mitochondrial matrix ubiquitin protein ligase binding ubiquitin protein ligase activity translation initiation factor activity ligase activity | details |
| CFinderADM001454 | positive regulation of intracellular protein transport positive regulation of vacuole organization protein K48-linked deubiquitination protein K63-linked deubiquitination Adherens junction dTDP-glucose 4,6-dehydratase activity UDP-glucose 4,6-dehydratase activity UDP-L-rhamnose biosynthesis nucleotide-sugar metabolic process Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM Endocytosis NF-kappa B signaling pathway Amino sugar and nucleotide sugar metabolism lipid metabolic process transport protein kinase activity intracellular hydrolase activity | details |
| CFinderADM001773 | regulation of lipid metabolic process formation of glycosidic bonds, GlycosylTransferases: GTnc histone lysine methylation (1->3)-beta-D-glucan biosynthetic process 1,3-β-D-glucan biosynthesis histone-lysine N-methyltransferase activity Lysine degradation 1,3-beta-D-glucan synthase complex Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription regulator: SET 1,3-beta-D-glucan synthase activity histone binding vindoline and vinblastine biosynthesis chromosome Plant-pathogen interaction dioxygenase activity calcium ion binding protein phosphorylation protein serine/threonine kinase activity | details |
| CFinderADM002021 | Protein_kinases_phosphatases, PPC:2.2.2: C-terminal Ankyrin Repeat Domain Kinase phospholipase A2 activity Thyroid hormone signaling pathway developmental growth late endosome to vacuole transport positive regulation of cell proliferation secretion by cell early endosome core mediator complex protein secretion cold acclimation vesicle docking involved in exocytosis negative regulation of abscisic acid-activated signaling pathway AMPK signaling pathway protein self-association RNA polymerase II transcription cofactor activity Basal transcription factors mediator complex Ubiquitin_Proteasome_system, E2: UBC regulation of transcription from RNA polymerase II promoter abscisic acid-activated signaling pathway coenzyme binding small GTPase mediated signal transduction lipid metabolic process defense response trans-Golgi network protein ubiquitination ubiquitin-protein transferase activity plasmodesma intracellular ATP binding GTP binding catalytic activity Ubiquitin_Proteasome_system, E3: RING hydrolase activity | details |
| CFinderADM002099 | Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Adherens junction glycyl-tRNA aminoacylation glycine-tRNA ligase activity Herpes simplex infection plant sterol biosynthesis Steroid biosynthesis NF-kappa B signaling pathway Aminoacyl-tRNA biosynthesis ATP binding protein kinase activity protein phosphorylation | details |
| CFinderADM002167 | histone lysine methylation Lysine degradation histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET histone binding vindoline and vinblastine biosynthesis chromosome cell cell redox homeostasis dioxygenase activity | details |
| CFinderADM002200 | translation initiation factor binding regulation of translational initiation iron-sulfur cluster assembly formation of translation preinitiation complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex mitochondrial matrix protein transport Transcription_related, Transcription factor: FAR1 protein binding translation initiation factor activity RNA transport chloroplast | details |
Expression profiles
 Show details about module gene expression profiling |