CFinderADM002200's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| translation initiation factor binding | 0.000104944 | GO:0031369 |
| regulation of translational initiation | 0.000263684 | GO:0006446 |
| iron-sulfur cluster assembly | 0.000263684 | GO:0016226 |
| formation of translation preinitiation complex | 0.000263684 | GO:0001731 |
| eukaryotic 48S preinitiation complex | 0.000378828 | GO:0033290 |
| eukaryotic 43S preinitiation complex | 0.000378828 | GO:0016282 |
| eukaryotic translation initiation factor 3 complex | 0.000378828 | GO:0005852 |
| mitochondrial matrix | 0.00044624 | GO:0005759 |
| protein transport | 0.000540546 | GO:0015031 |
| Transcription_related, Transcription factor: FAR1 | 0.000717731 | TF family |
| protein binding | 0.001172293 | GO:0005515 |
| translation initiation factor activity | 0.001172293 | GO:0003743 |
| RNA transport | 0.002712166 | KEGG pathway |
| chloroplast | 0.0383089 | GO:0009507 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T014958 | AT1G15370 (5.00E-65) | SNARE-like superfamily protein |
| CRO_T018261 | AT1G61150 (2.00E-45) | LisH and RanBPM domains containing protein |
| CRO_T027911 | AT2G20515 (1.00E-36) | unknown protein |
| CRO_T029007 | AT3G56150 (5.00E-35) | EIF3C|eukaryotic translation initiation factor 3C |
| CRO_T030366 | AT4G12130 (4.00E-136) | Glycine cleavage T-protein family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000665 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family endoplasmic reticulum organization Wnt signaling pathway translation initiation factor binding regulation of cell shape Endocytosis regulation of translational initiation formation of translation preinitiation complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex eukaryotic translation initiation factor 3 complex peptidyl-serine phosphorylation Transcription_related, Transcription factor: FAR1 RNA transport translation initiation factor activity endoplasmic reticulum membrane metabolic process transferase activity protein serine/threonine kinase activity integral component of membrane | details |
| CFinderADM000824 | mitochondrial matrix Transcription_related, Transcription factor: bZIP CDP-diacylglycerol biosynthesis I plant sterol biosynthesis diacylglycerol and triacylglycerol biosynthesis iron-sulfur cluster assembly Steroid biosynthesis Glycerolipid metabolism translational initiation transferase activity, transferring acyl groups translation initiation factor activity Plant hormone signal transduction sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding metabolic process regulation of transcription, DNA-templated | details |
| CFinderADM000825 | Toll and Imd signaling pathway postreplication repair protein K63-linked ubiquitination plant sterol biosynthesis iron-sulfur cluster assembly Ubiquitin_Proteasome_system, E2: UBC Steroid biosynthesis translational initiation mitochondrial matrix ubiquitin protein ligase binding ubiquitin protein ligase activity translation initiation factor activity ligase activity | details |
| CFinderADM001692 | histone ubiquitination mitochondrial respiratory chain complex III mitochondrial electron transport, ubiquinol to cytochrome c cytoplasmic microtubule organization Ubiquitin_Proteasome_system, E2: UBC protein polyubiquitination microtubule-severing ATPase activity protein transport proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair ubiquitin protein ligase binding helicase activity protein binding ligase activity ubiquitin protein ligase activity Ubiquitin mediated proteolysis ATP binding Oxidative phosphorylation Protein processing in endoplasmic reticulum | details |
| CFinderADM002199 | Adherens junction Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I histone lysine methylation histone-lysine N-methyltransferase activity plant sterol biosynthesis Transcription_related, Transcription regulator: SET chromosome Lysine degradation histone binding Steroid biosynthesis NF-kappa B signaling pathway lipid metabolic process protein kinase activity hydrolase activity protein phosphorylation | details |
| CFinderADM002206 | gamma-tubulin small complex equatorial microtubule organizing center centrosome duplication interphase microtubule nucleation by interphase microtubule organizing center mitotic spindle assembly meiotic nuclear division gamma-tubulin binding microtubule minus-end binding cell morphogenesis cytoskeleton organization cytoplasmic microtubule organization structural constituent of cytoskeleton actin binding microtubule | details |
Expression profiles
 Show details about module gene expression profiling |