CFinderADM002202's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Endocrine resistance | 3.93E-06 | KEGG pathway |
| protein-arginine omega-N asymmetric methyltransferase activity | 6.43E-05 | GO:0035242 |
| histone-arginine N-methyltransferase activity | 6.43E-05 | GO:0008469 |
| auxin efflux transmembrane transporter activity | 6.43E-05 | GO:0010329 |
| histone arginine methylation | 8.26E-05 | GO:0034969 |
| peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 8.26E-05 | GO:0019919 |
| auxin homeostasis | 0.000108153 | GO:0010252 |
| auxin efflux | 0.000108153 | GO:0010315 |
| auxin polar transport | 0.00073278 | GO:0009926 |
| protein polyubiquitination | 0.00073278 | GO:0000209 |
| auxin-activated signaling pathway | 0.000883372 | GO:0009734 |
| pollen development | 0.000883372 | GO:0009555 |
| translational initiation | 0.00103627 | GO:0006413 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.00103627 | GO:0042787 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.001173273 | GO:0043161 |
| translation initiation factor activity | 0.002227269 | GO:0003743 |
| ubiquitin protein ligase activity | 0.002468614 | GO:0061630 |
| RNA transport | 0.002511264 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3: RING | 0.011727555 | ubs family |
| transmembrane transport | 0.018663094 | GO:0055085 |
| endoplasmic reticulum | 0.026184788 | GO:0005783 |
| regulation of transcription, DNA-templated | 0.039171078 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001734 | AT3G06930 (6.00E-126) | ATPRMT4B|PROTEIN ARGININE METHYLTRANSFERASE 4B |
| CRO_T016751 | AT1G04790 (1.00E-13) | RING/U-box superfamily protein |
| CRO_T023508 | AT1G42440 (7.00E-127) | unknown protein |
| CRO_T024391 | AT5G15100 (1.00E-98) | ATPIN8|PIN-FORMED 8 |
| CRO_T029934 | AT4G27130 (3.00E-55) | Translation initiation factor SUI1 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000367 | xylan biosynthesis clathrin-coated vesicle clathrin binding 1-phosphatidylinositol binding formation of glycosidic bonds, GlycosylTransferases: GTnc clathrin coat assembly DNA-directed DNA polymerase activity cellulose synthase (UDP-forming) activity DNA biosynthetic process cellulose biosynthetic process translational initiation translation initiation factor activity RNA transport cell wall organization transcription, DNA-templated DNA binding | details |
| CFinderADM000593 | auxin efflux transmembrane transporter activity auxin homeostasis auxin efflux pollen development auxin-activated signaling pathway auxin polar transport Plant-pathogen interaction calcium ion binding Ubiquitin_Proteasome_system, E3: RING transmembrane transport | details |
| CFinderADM000728 | generation of catalytic spliceosome for first transesterification step Prp19 complex post-mRNA release spliceosomal complex catalytic step 1 spliceosome prespliceosome catalytic step 2 spliceosome protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Spliceosome ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING nucleotide binding nucleic acid binding | details |
| CFinderADM000761 | auxin efflux transmembrane transporter activity auxin homeostasis auxin efflux protein polyubiquitination auxin polar transport auxin-activated signaling pathway pollen development protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process integral component of membrane ubiquitin protein ligase activity endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING transmembrane transport | details |
| CFinderADM001626 | auxin homeostasis auxin efflux auxin efflux transmembrane transporter activity poly(A) RNA binding pollen development auxin-activated signaling pathway auxin polar transport RNA processing Plant-pathogen interaction RNA degradation cytoplasm ATP-dependent RNA helicase activity formation of glycosidic bonds, GlycosylTransferases: GTnc calcium ion binding transmembrane transport endoplasmic reticulum | details |
| CFinderADM001763 | Golgi to plasma membrane transport exocyst assembly transcription from RNA polymerase III promoter DNA-directed RNA polymerase III complex exocyst Ras signaling pathway protein polyubiquitination RNA polymerase III activity protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Purine metabolism ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING nucleic acid binding nucleotide binding | details |
| CFinderADM001972 | NuA4 histone acetyltransferase complex Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process protein polyubiquitination Transcription_related, Transcription factor: NAC ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING phosphorylation RNA binding protein kinase activity regulation of transcription, DNA-templated nucleotide binding | details |
| CFinderADM002006 | Golgi to plasma membrane transport exocyst assembly 1,3-β-D-glucan biosynthesis Ras signaling pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase membrane part exocyst protein polyubiquitination peptidyl-serine phosphorylation protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process intracellular signal transduction transferase activity, transferring glycosyl groups ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING intracellular | details |
Expression profiles
 Show details about module gene expression profiling |