CFinderADM001763's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Golgi to plasma membrane transport | 2.19E-05 | GO:0006893 |
| exocyst assembly | 2.19E-05 | GO:0001927 |
| transcription from RNA polymerase III promoter | 4.38E-05 | GO:0006383 |
| DNA-directed RNA polymerase III complex | 0.000172685 | GO:0005666 |
| exocyst | 0.000172685 | GO:0000145 |
| Ras signaling pathway | 0.000180153 | KEGG pathway |
| protein polyubiquitination | 0.000408437 | GO:0000209 |
| RNA polymerase III activity | 0.000499166 | GO:0001056 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.000711693 | GO:0042787 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.000799283 | GO:0043161 |
| Purine metabolism | 0.003718562 | KEGG pathway |
| ubiquitin protein ligase activity | 0.006171535 | GO:0061630 |
| Ubiquitin_Proteasome_system, E3: RING | 0.011727555 | ubs family |
| nucleic acid binding | 0.039981006 | GO:0003676 |
| nucleotide binding | 0.044084935 | GO:0000166 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003911 | AT5G06970 (0) | Protein of unknown function (DUF810) |
| CRO_T007069 | AT4G17720 (4.00E-85) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T016751 | AT1G04790 (1.00E-13) | RING/U-box superfamily protein |
| CRO_T022685 | AT3G57660 (4.00E-40) | NRPA1|nuclear RNA polymerase A1 |
| CRO_T026306 | AT1G21170 (0) | SEC5B|Exocyst complex component SEC5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000728 | generation of catalytic spliceosome for first transesterification step Prp19 complex post-mRNA release spliceosomal complex catalytic step 1 spliceosome prespliceosome catalytic step 2 spliceosome protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Spliceosome ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING nucleotide binding nucleic acid binding | details |
| CFinderADM000761 | auxin efflux transmembrane transporter activity auxin homeostasis auxin efflux protein polyubiquitination auxin polar transport auxin-activated signaling pathway pollen development protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process integral component of membrane ubiquitin protein ligase activity endoplasmic reticulum Ubiquitin_Proteasome_system, E3: RING transmembrane transport | details |
| CFinderADM001000 | histone lysine methylation cardiolipin biosynthesis II phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic) histone-lysine N-methyltransferase activity Transcription_related, Transcription regulator: SET Protein processing in endoplasmic reticulum endoplasmic reticulum membrane | details |
| CFinderADM001693 | plant-type primary cell wall biogenesis cellulose biosynthesis plant-type secondary cell wall biogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose biosynthetic process cellulose synthase (UDP-forming) activity cell wall organization trans-Golgi network endosome Ubiquitin_Proteasome_system, E3: RING plasmodesma nucleic acid binding nucleotide binding | details |
| CFinderADM001972 | NuA4 histone acetyltransferase complex Protein_kinases_phosphatases, PPC:2.1.5: ATN1 Like Family protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process protein polyubiquitination Transcription_related, Transcription factor: NAC ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING phosphorylation RNA binding protein kinase activity regulation of transcription, DNA-templated nucleotide binding | details |
| CFinderADM001997 | long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay sugar mediated signaling pathway response to wounding salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cytoplasmic mRNA processing body defense response to bacterium RNA transport helicase activity plasmodesma | details |
| CFinderADM002006 | Golgi to plasma membrane transport exocyst assembly 1,3-β-D-glucan biosynthesis Ras signaling pathway Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase membrane part exocyst protein polyubiquitination peptidyl-serine phosphorylation protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process intracellular signal transduction transferase activity, transferring glycosyl groups ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING intracellular | details |
| CFinderADM002202 | Endocrine resistance protein-arginine omega-N asymmetric methyltransferase activity histone-arginine N-methyltransferase activity auxin efflux transmembrane transporter activity histone arginine methylation peptidyl-arginine methylation, to asymmetrical-dimethyl arginine auxin homeostasis auxin efflux auxin polar transport protein polyubiquitination auxin-activated signaling pathway pollen development translational initiation protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process translation initiation factor activity ubiquitin protein ligase activity RNA transport Ubiquitin_Proteasome_system, E3: RING transmembrane transport endoplasmic reticulum regulation of transcription, DNA-templated | details |
| CFinderADM002212 | phosphoric ester hydrolase activity carboxypeptidase activity 3-phosphoinositide biosynthesis seed development biosynthetic process carbohydrate binding vacuolar membrane plant-type cell wall endoplasmic reticulum Golgi apparatus proteolysis | details |
Expression profiles
 Show details about module gene expression profiling |