CFinderADM002210's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrial genome maintenance | 6.38E-05 | GO:0000002 |
| DNA recombinase assembly | 6.70E-05 | GO:0000730 |
| mitotic recombination | 8.41E-05 | GO:0006312 |
| strand invasion | 8.41E-05 | GO:0042148 |
| response to ionizing radiation | 8.41E-05 | GO:0010212 |
| recombinase activity | 8.47E-05 | GO:0000150 |
| endodeoxyribonuclease activity | 8.47E-05 | GO:0004520 |
| four-way junction DNA binding | 8.47E-05 | GO:0000400 |
| DNA-dependent ATPase activity | 0.000148156 | GO:0008094 |
| single-stranded DNA binding | 0.000285228 | GO:0003697 |
| double-stranded DNA binding | 0.000373981 | GO:0003690 |
| GTPase activator activity | 0.000373981 | GO:0005096 |
| response to heat | 0.000430023 | GO:0009408 |
| pollen development | 0.000749706 | GO:0009555 |
| positive regulation of GTPase activity | 0.000749706 | GO:0043547 |
| Endocytosis | 0.001172343 | KEGG pathway |
| peptidase activity | 0.001455929 | GO:0008233 |
| embryo development ending in seed dormancy | 0.002498666 | GO:0009793 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006837609 | cazy family |
| proteolysis | 0.013858674 | GO:0006508 |
| oxidoreductase activity | 0.020208914 | GO:0016491 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007774 | AT5G02860 (0) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T011623 | AT1G02020 (2.00E-164) | nitroreductase family protein |
| CRO_T018433 | AT3G10140 (9.00E-71) | RECA3|RECA homolog 3 |
| CRO_T025048 | AT4G26466 (4.00E-35) | LRE|LORELEI |
| CRO_T027332 | AT3G17660 (8.00E-21) | AGD15|ARF-GAP domain 15 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001384 | ubiquinone-6 biosynthetic process maltose metabolic process alpha-1,4-glucosidase activity maltose alpha-glucosidase activity NADH dehydrogenase activity translational elongation translation elongation factor activity N-Glycan biosynthesis carbohydrate binding GTPase activity Spliceosome GTP binding Ribosome | details |
| CFinderADM002059 | adenosine ribonucleotides de novo biosynthesis ATPase activity, coupled to transmembrane movement of substances chorismate synthase activity H3 histone acetyltransferase activity regulation of phosphoprotein phosphatase activity histone H3 acetylation protein phosphatase type 1 complex chorismate biosynthesis from 3-dehydroquinate root morphogenesis chorismate biosynthetic process histone acetyltransferase complex transmembrane transport plant-type vacuole protein phosphatase inhibitor activity Transcription_related, Transcription regulator: GNAT Notch signaling pathway aromatic amino acid family biosynthetic process flower development response to light stimulus cellular amino acid biosynthetic process FMN binding GTPase activator activity ABC transporters pollen development positive regulation of GTPase activity peptidase activity signal transduction embryo development ending in seed dormancy Biosynthesis of amino acids Endocytosis vacuolar membrane nucleolus Golgi apparatus Oxidative phosphorylation proteolysis chloroplast stroma | details |
| CFinderADM002116 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 mRNA splicing, via spliceosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Spliceosome formation of glycosidic bonds, GlycosylTransferases: GTnc RNA binding | details |
| CFinderADM002295 | peptidyl-proline hydroxylation Toll and Imd signaling pathway protein K63-linked ubiquitination postreplication repair Nicotinate and nicotinamide metabolism procollagen-proline 4-dioxygenase activity NAD/NADH phosphorylation and dephosphorylation Arginine and proline metabolism L-ascorbic acid binding Ubiquitin_Proteasome_system, E2: UBC ubiquitin protein ligase binding ligase activity ubiquitin protein ligase activity formation of glycosidic bonds, GlycosylTransferases: GTnc iron ion binding | details |
Expression profiles
 Show details about module gene expression profiling |